Detail information of GWHGAAZE015947


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN83645.19.03832E-53hypothetical protein VITISV_016194 [Vitis vinifera]
Swissprottr|Q9XI07|SWI3C_ARATH2E-44SWI/SNF complex subunit SWI3C
trEMBLtr|A5BW71|A5BW71_VITVI3E-53Putative uncharacterized protein {ECO:0000313|EMBL:CAN83645.1}
TAIR10AT1G21700.17E-32SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6414400064148891-
GWHAAZE00000004mRNA6414400064148891-
GWHAAZE00000004exon6414888964148891-
GWHAAZE00000004exon6414842764148518-
GWHAAZE00000004exon6414727564147348-
GWHAAZE00000004exon6414700864147192-
GWHAAZE00000004exon6414400064144254-
GWHAAZE00000004CDS6414888964148891-
GWHAAZE00000004CDS6414842764148518-
GWHAAZE00000004CDS6414727564147348-
GWHAAZE00000004CDS6414700864147192-
GWHAAZE00000004CDS6414400064144254-
Transcript Sequence

Network for GWHGAAZE015947

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0170


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16495.6SWIRM-assoc_1871583.40E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11649SMARCC Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.791
SRR3591706second leaf9.286
SRR3591707mature leaf14.867
SRR3591708Shoot apex11.693
SRR3591709Stem22.899
SRR3591710White floral bud7.712
SRR3591711White flower9.046
SRR3591712Green floral bud9.767
SRR3591713Yellow flower6.226
SRP173429 SRR8316895Juvenile bud stage 9.356
SRR8316896Juvenile bud stage 10.656
SRR8316897Juvenile bud stage 5.416
SRR8316894Third green stage 3.565
SRR8316900Third green stage 12.002
SRR8316901Third green stage 11.623
SRR8316898Complete white stage 3.734
SRR8316899Complete white stage 13.474
SRR8316903Complete white stage 6.402
SRR8316902Silver flowering stage3.420
SRR8316904Silver flowering stage5.264
SRR8316905Silver flowering stage2.580
SRR8316906Gold flowering stage 6.339
SRR8316907Gold flowering stage 7.803
SRR8316908Gold flowering stage 6.627
SRP132670SRR6706286Control12.472
SRR6706287Light intensity 50%10.668
SRR6706288Light intensity 20%11.073
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.847
CNS0095593Slightly white alabastrum(diploid) 215.031
CNS0095594Slightly white alabastrum(diploid) 313.844
CNS0095595Whole white alabastrum(diploid) 211.276
CNS0095596Whole white alabastrum(diploid) 312.848
CNS0095597Whole white alabastrum(diploid) 413.801
CNS0095598Silvery flower (diploied) 118.039
CNS0095599Silvery flower (diploied) 211.017
CNS0095600Silvery flower (diploied) 310.071
CNS0095601Golden flower (diploid) 113.484
CNS0095602Golden flower (diploid) 211.302
CNS0095603Golden flower (diploid) 39.093
CNS0095604Slightly white alabastrum(tetraploid) 117.418
CNS0095605Slightly white alabastrum(tetraploid) 214.474
CNS0095606Slightly white alabastrum(tetraploid) 320.363
CNS0095607Whole white alabastrum(tetraploid) 111.807
CNS0095608Whole white alabastrum(tetraploid) 210.064
CNS0095609Whole white alabastrum(tetraploid) 313.166
CNS0095610Silvery flower (tetraploid) 111.749
CNS0095611Silvery flower (tetraploid) 211.863
CNS0095612Silvery flower (tetraploid) 39.542
CNS0095613Golden flower (tetraploid) 17.457
CNS0095614Golden flower (tetraploid) 29.260
CNS0095615Golden flower (tetraploid) 35.897
CRA001975CRR073297Stem 120.145
CRR073298Stem 218.524
CRR073299Stem 318.247
CRR073300Leaf 119.156
CRR073301Leaf 219.567
CRR073302Leaf 313.436
CRR073303Juvenile bud 118.067
CRR073304Juvenile bud 210.812
CRR073305Juvenile bud 317.875
CRR073306Third green 14.017
CRR073307Third green 25.324
CRR073308Third green 33.618
CRR073309Second white 12.478
CRR073310Second white 24.597
CRR073311Second white 31.990
CRR073312Silver flowering 12.096
CRR073313Silver flowering 22.085
CRR073314Silver flowering 31.528
CRR073315Gold flowering 19.601
CRR073316Gold flowering 213.746
CRR073317Gold flowering 35.716
CRR073318Tawny withering 114.873
CRR073319Tawny withering 218.943
CRR073320Tawny withering 318.075