Gene detail

Detail information of GWHGAAZE015948

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007019141.1	2.901E-133	SWITCH/sucrose nonfermenting 3C [Theobroma cacao]
Swissprot	tr\|Q9XI07\|SWI3C_ARATH	4E-110	SWI/SNF complex subunit SWI3C
trEMBL	tr\|A0A061FH16\|A0A061FH16_THECC	1E-133	SWITCH/sucrose nonfermenting 3C {ECO:0000313\|EMBL:EOY16366.1}
TAIR10	AT1G21700.1	7E-91	SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	64165299	64171334	-
GWHAAZE00000004	mRNA	64165299	64171334	-
GWHAAZE00000004	exon	64170912	64171334	-
GWHAAZE00000004	exon	64165485	64165845	-
GWHAAZE00000004	exon	64165299	64165399	-
GWHAAZE00000004	CDS	64170912	64171334	-
GWHAAZE00000004	CDS	64165485	64165845	-
GWHAAZE00000004	CDS	64165299	64165399	-

Transcript Sequence
>GWHTAAZE015964 ATGGAGTGTCGGAATTGGATTGTTGCCAAGTCCATGGAGAATCCAGAGAAGAGGCTGTCACTTACCGATTGCCATGTTCTGGTATCTGGTATCAGTATAGATGATATGAGTAGAATTTTTCGGTTTCTTGATCACTGGGGGATCATTAATTACTGTGCTACTGTTCCGCATAATGTGACCCAAAATGATGGGCCGTGTTTGAATGAGGATTCAAATGGGGAACTTAGTCTTTCAGTGGCTGCTTTCAAATCAATTGATAGTTTGATCCAATTTGATAAGCCTAAATGTAGGCTTAAACCAGCAGATGTTCATGGTGAAGAGGCCTCTGATTTGGACATTGAAATCCGTGAACGATTAACGGAAAACCAGTGCATCTATTGTTCTCGGCCTCTGCCTATTCTTTACTACCAGTCACAGAAAGAGGTTGATGTACTATTGTGCTCGGATTGTTTCACTGATGGGAGATATGTAACTGGTCATTCAAGCCTAGATTTTGTAAGGATTGACCCCGCTAAAGATTATGGAGATCAGGACGGAGAAAGTTGGACCGATCAAGAAACGCTTATGCTCCTTGAGGCAATGGAACTCTACAATGAGAACTGGAATGACATTGCAGAGCATGTTGGCACCAGGACAAAAGCACAATGCATACTTCATTTTATCCGTTGGACAGTCGATGATGGTCTGCTGGATAACATTGATGTAATTAATACTTCTGCCTCAACAATTTTGTCGAACAACGATTGTGGAAGATCTCATTCAAATGCAAATGGGAATTCTGCAGGATCCAGCTTCGAAGACCCTGATTCTGAAAGTAAACTTCCTTTTGCAAATTCGGGAAATCCGGTTATGGCATTGGTGGGTGAATTTATTTATTTGAAATCA

Network for GWHGAAZE015948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	1	51	7.90E-11
PF00249.32	Myb_DNA-binding	181	223	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11649	SMARCC	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.347
	SRR3591706	second leaf	8.998
	SRR3591707	mature leaf	12.403
	SRR3591708	Shoot apex	7.961
	SRR3591709	Stem	12.419
	SRR3591710	White floral bud	5.872
	SRR3591711	White flower	6.316
	SRR3591712	Green floral bud	6.979
	SRR3591713	Yellow flower	6.572
SRP173429	SRR8316895	Juvenile bud stage	4.624
	SRR8316896	Juvenile bud stage	5.140
	SRR8316897	Juvenile bud stage	2.504
	SRR8316894	Third green stage	1.250
	SRR8316900	Third green stage	6.817
	SRR8316901	Third green stage	5.547
	SRR8316898	Complete white stage	2.887
	SRR8316899	Complete white stage	9.529
	SRR8316903	Complete white stage	3.921
	SRR8316902	Silver flowering stage	1.359
	SRR8316904	Silver flowering stage	2.680
	SRR8316905	Silver flowering stage	1.535
	SRR8316906	Gold flowering stage	4.973
	SRR8316907	Gold flowering stage	3.728
	SRR8316908	Gold flowering stage	5.852
SRP132670	SRR6706286	Control	1.869
	SRR6706287	Light intensity 50%	2.325
	SRR6706288	Light intensity 20%	2.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.243
	CNS0095593	Slightly white alabastrum(diploid) 2	2.848
	CNS0095594	Slightly white alabastrum(diploid) 3	2.773
	CNS0095595	Whole white alabastrum(diploid) 2	2.368
	CNS0095596	Whole white alabastrum(diploid) 3	2.904
	CNS0095597	Whole white alabastrum(diploid) 4	3.456
	CNS0095598	Silvery flower (diploied) 1	4.765
	CNS0095599	Silvery flower (diploied) 2	4.904
	CNS0095600	Silvery flower (diploied) 3	5.501
	CNS0095601	Golden flower (diploid) 1	4.155
	CNS0095602	Golden flower (diploid) 2	5.402
	CNS0095603	Golden flower (diploid) 3	5.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.554
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.688
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.047
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.097
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.629
	CNS0095610	Silvery flower (tetraploid) 1	6.554
	CNS0095611	Silvery flower (tetraploid) 2	6.630
	CNS0095612	Silvery flower (tetraploid) 3	5.150
	CNS0095613	Golden flower (tetraploid) 1	3.569
	CNS0095614	Golden flower (tetraploid) 2	6.563
	CNS0095615	Golden flower (tetraploid) 3	5.312
CRA001975	CRR073297	Stem 1	6.136
	CRR073298	Stem 2	5.739
	CRR073299	Stem 3	3.285
	CRR073300	Leaf 1	5.278
	CRR073301	Leaf 2	4.055
	CRR073302	Leaf 3	4.074
	CRR073303	Juvenile bud 1	3.265
	CRR073304	Juvenile bud 2	4.202
	CRR073305	Juvenile bud 3	5.133
	CRR073306	Third green 1	1.384
	CRR073307	Third green 2	0.725
	CRR073308	Third green 3	1.507
	CRR073309	Second white 1	1.142
	CRR073310	Second white 2	0.978
	CRR073311	Second white 3	1.883
	CRR073312	Silver flowering 1	0.994
	CRR073313	Silver flowering 2	1.113
	CRR073314	Silver flowering 3	1.624
	CRR073315	Gold flowering 1	2.752
	CRR073316	Gold flowering 2	5.219
	CRR073317	Gold flowering 3	3.160
	CRR073318	Tawny withering 1	2.495
	CRR073319	Tawny withering 2	5.586
	CRR073320	Tawny withering 3	5.574