Gene detail

Detail information of GWHGAAZE015950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664183.1	5.0017E-153	PREDICTED: SWI/SNF complex subunit SWI3C isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9XI07\|SWI3C_ARATH	2E-114	SWI/SNF complex subunit SWI3C
trEMBL	tr\|A0A061FH16\|A0A061FH16_THECC	7E-152	SWITCH/sucrose nonfermenting 3C {ECO:0000313\|EMBL:EOY16366.1}
TAIR10	AT1G21700.1	2E-94	SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	64180207	64188411	+
GWHAAZE00000004	mRNA	64180207	64188411	+
GWHAAZE00000004	exon	64180207	64180225	+
GWHAAZE00000004	exon	64180346	64180807	+
GWHAAZE00000004	exon	64181922	64182135	+
GWHAAZE00000004	exon	64182300	64182432	+
GWHAAZE00000004	exon	64187512	64187872	+
GWHAAZE00000004	exon	64187958	64188031	+
GWHAAZE00000004	exon	64188343	64188411	+
GWHAAZE00000004	CDS	64180207	64180225	+
GWHAAZE00000004	CDS	64180346	64180807	+
GWHAAZE00000004	CDS	64181922	64182135	+
GWHAAZE00000004	CDS	64182300	64182432	+
GWHAAZE00000004	CDS	64187512	64187872	+
GWHAAZE00000004	CDS	64187958	64188031	+
GWHAAZE00000004	CDS	64188343	64188411	+

Transcript Sequence
>GWHTAAZE015966 ATGCCAGCTTCTTCCGCAGAGGCACGCAACAGGTGGAGGAAGCGGAAGAGAGGTAGAAAACCTAAACTCCAATCACAAGACGATGAAGATCTCGAGGACGACGAAGAAGAACAAGATGATGAATCAGACGAACAACAACAACATCATCATCAAAACCCTAACCCTAACTGCTCCAACAATCCAACGGAAGTATTGTCAGATGTGGTTCGAATCTCCGACTTTCCTGCGGTGGTCAGGCACATGGTGAATCGGCCACACTCGTTGGTTATGGCGATTTTGGATGCGGAGAGGGCGAGTCAATGCGGGGAGAGTAGGGGGAATGGGGTTGTTTTGGAGAATATATCGTATGGTCAGGTCCGGGCTTTGTCTGTGGATGGGTGTTCTGAGAGGTTTGTGATTACACCGCCGGATATTGTGGAGGGAAGGGGTGTGGTGAAGAGGTTTGGGAGTGACCGGGTTCTTGTTGTGCCGATGCACTCAGAGTGGTTTTCACCTAACTCGGTGCATAGATTGGAGAGACAAGTAGTGCCGCATTTTTTCTCTGGGAAGACAAACCAAACACCGGAAAAATACATGGAGTGTCGGAATTGGATTGTTGCCAAGTCCATGGAGAATCCAGAGAAGAGGCTGTCACTTACCGATTGCCATGTTCTGGTATCTGGTATCAGTATAGATGATATGAGTAGAATTTTTCGGCTTAAACCAGCAGATGTTCATGGTGAAGAGGCCTCTGATTTGGACATTGAAATCCGTGAACGATTAACGGAAAACCAGTGCATCTATTGTTCTCGGCCTCTGCCTATTCTTTACTACCAGTCACAGAAAGAGGTTGATGTACTATTGTGCTCGGATTGTTTCACTGATGGGAGATATGTAACTGGTCATTCAAGCCTAGATTTTGTAAGGATTGACCCCGCTAAAGATTATGGAGATCAGGACGGAGAAAGTTGGACCGATCAAGAAACGCTTATGCTCCTTGAGGCAATGGAACTCTACAATGAGAACTGGAATGACATTGCAGAGCATGTTGGCACCAGGACAAAAGCACAATGCATACTTCATTTTATCCGTTGGACAGTCGATGATGGTCTGCTGGATAACATTGATGTAATTAATACTTCTGCCTCAACAATTTTGTCGAACAACGATTGTGGAAGATCTCATTCAAATGCAAATGGGAATTCTGCAGGATCCAGCTTCGAAGACCCTGATTCTGAAAGTAAACTTCCTTTTGCAAATTCGGGAAATCCGGTTATGGCATTGCATGATCCATGGGAATGGTCTCCCTTCCTTACGTTCAGGCGTTCAGCCTATGATCAGCCTGAAAAATGA

Network for GWHGAAZE015950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	157	231	2.80E-17
PF00249.32	Myb_DNA-binding	316	358	4.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11649	SMARCC	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.163
	SRR3591706	second leaf	8.693
	SRR3591707	mature leaf	14.388
	SRR3591708	Shoot apex	7.849
	SRR3591709	Stem	12.505
	SRR3591710	White floral bud	4.933
	SRR3591711	White flower	5.091
	SRR3591712	Green floral bud	4.728
	SRR3591713	Yellow flower	4.230
SRP173429	SRR8316895	Juvenile bud stage	5.246
	SRR8316896	Juvenile bud stage	6.381
	SRR8316897	Juvenile bud stage	4.683
	SRR8316894	Third green stage	3.994
	SRR8316900	Third green stage	7.492
	SRR8316901	Third green stage	6.204
	SRR8316898	Complete white stage	2.072
	SRR8316899	Complete white stage	9.186
	SRR8316903	Complete white stage	5.879
	SRR8316902	Silver flowering stage	3.237
	SRR8316904	Silver flowering stage	3.744
	SRR8316905	Silver flowering stage	2.293
	SRR8316906	Gold flowering stage	3.859
	SRR8316907	Gold flowering stage	2.737
	SRR8316908	Gold flowering stage	6.233
SRP132670	SRR6706286	Control	9.188
	SRR6706287	Light intensity 50%	10.389
	SRR6706288	Light intensity 20%	10.856
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.491
	CNS0095593	Slightly white alabastrum(diploid) 2	2.129
	CNS0095594	Slightly white alabastrum(diploid) 3	3.024
	CNS0095595	Whole white alabastrum(diploid) 2	3.758
	CNS0095596	Whole white alabastrum(diploid) 3	3.739
	CNS0095597	Whole white alabastrum(diploid) 4	2.992
	CNS0095598	Silvery flower (diploied) 1	4.842
	CNS0095599	Silvery flower (diploied) 2	3.328
	CNS0095600	Silvery flower (diploied) 3	5.647
	CNS0095601	Golden flower (diploid) 1	4.813
	CNS0095602	Golden flower (diploid) 2	5.632
	CNS0095603	Golden flower (diploid) 3	7.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.608
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.084
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.099
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.321
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.660
	CNS0095610	Silvery flower (tetraploid) 1	6.301
	CNS0095611	Silvery flower (tetraploid) 2	6.617
	CNS0095612	Silvery flower (tetraploid) 3	4.806
	CNS0095613	Golden flower (tetraploid) 1	2.746
	CNS0095614	Golden flower (tetraploid) 2	5.787
	CNS0095615	Golden flower (tetraploid) 3	4.657
CRA001975	CRR073297	Stem 1	9.112
	CRR073298	Stem 2	8.298
	CRR073299	Stem 3	6.234
	CRR073300	Leaf 1	8.262
	CRR073301	Leaf 2	7.510
	CRR073302	Leaf 3	6.892
	CRR073303	Juvenile bud 1	6.810
	CRR073304	Juvenile bud 2	4.661
	CRR073305	Juvenile bud 3	7.833
	CRR073306	Third green 1	2.046
	CRR073307	Third green 2	2.230
	CRR073308	Third green 3	2.345
	CRR073309	Second white 1	1.232
	CRR073310	Second white 2	2.223
	CRR073311	Second white 3	2.042
	CRR073312	Silver flowering 1	1.172
	CRR073313	Silver flowering 2	0.688
	CRR073314	Silver flowering 3	2.424
	CRR073315	Gold flowering 1	4.885
	CRR073316	Gold flowering 2	7.050
	CRR073317	Gold flowering 3	4.210
	CRR073318	Tawny withering 1	7.953
	CRR073319	Tawny withering 2	3.508
	CRR073320	Tawny withering 3	6.972