Detail information of GWHGAAZE016006


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP11949.11.42137E-84unnamed protein product [Coffea canephora]
Swissprottr|Q9SGH2|MBD9_ARATH5E-13Methyl-CpG-binding domain-containing protein 9
trEMBLtr|A0A068UUJ9|A0A068UUJ9_COFCA5E-85Coffea canephora DH200=94 genomic scaffold, scaffold_61 {ECO:0000313|EMBL:CDP11949.1}
TAIR10AT1G77250.11E-45RING/FYVE/PHD-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6635539566356720-
GWHAAZE00000004mRNA6635539566356720-
GWHAAZE00000004exon6635539566356720-
GWHAAZE00000004CDS6635539566356720-
Transcript Sequence

Network for GWHGAAZE016006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD26712.80E-07
PF00628.30PHD1712162.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.925
SRR3591706second leaf4.827
SRR3591707mature leaf6.767
SRR3591708Shoot apex9.471
SRR3591709Stem5.758
SRR3591710White floral bud6.567
SRR3591711White flower9.742
SRR3591712Green floral bud7.167
SRR3591713Yellow flower5.421
SRP173429 SRR8316895Juvenile bud stage 5.511
SRR8316896Juvenile bud stage 6.574
SRR8316897Juvenile bud stage 3.325
SRR8316894Third green stage 2.808
SRR8316900Third green stage 5.654
SRR8316901Third green stage 6.085
SRR8316898Complete white stage 2.098
SRR8316899Complete white stage 9.595
SRR8316903Complete white stage 4.563
SRR8316902Silver flowering stage2.642
SRR8316904Silver flowering stage4.577
SRR8316905Silver flowering stage1.909
SRR8316906Gold flowering stage 6.668
SRR8316907Gold flowering stage 6.136
SRR8316908Gold flowering stage 8.450
SRP132670SRR6706286Control5.880
SRR6706287Light intensity 50%5.930
SRR6706288Light intensity 20%5.789
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.020
CNS0095593Slightly white alabastrum(diploid) 25.860
CNS0095594Slightly white alabastrum(diploid) 33.942
CNS0095595Whole white alabastrum(diploid) 23.781
CNS0095596Whole white alabastrum(diploid) 33.623
CNS0095597Whole white alabastrum(diploid) 43.187
CNS0095598Silvery flower (diploied) 111.674
CNS0095599Silvery flower (diploied) 25.844
CNS0095600Silvery flower (diploied) 36.268
CNS0095601Golden flower (diploid) 16.673
CNS0095602Golden flower (diploid) 27.286
CNS0095603Golden flower (diploid) 37.242
CNS0095604Slightly white alabastrum(tetraploid) 14.324
CNS0095605Slightly white alabastrum(tetraploid) 24.428
CNS0095606Slightly white alabastrum(tetraploid) 39.205
CNS0095607Whole white alabastrum(tetraploid) 13.688
CNS0095608Whole white alabastrum(tetraploid) 22.856
CNS0095609Whole white alabastrum(tetraploid) 36.225
CNS0095610Silvery flower (tetraploid) 16.479
CNS0095611Silvery flower (tetraploid) 25.221
CNS0095612Silvery flower (tetraploid) 34.911
CNS0095613Golden flower (tetraploid) 16.003
CNS0095614Golden flower (tetraploid) 27.703
CNS0095615Golden flower (tetraploid) 35.662
CRA001975CRR073297Stem 19.407
CRR073298Stem 27.972
CRR073299Stem 35.070
CRR073300Leaf 15.096
CRR073301Leaf 25.914
CRR073302Leaf 33.778
CRR073303Juvenile bud 13.156
CRR073304Juvenile bud 22.423
CRR073305Juvenile bud 35.607
CRR073306Third green 10.422
CRR073307Third green 20.456
CRR073308Third green 31.028
CRR073309Second white 11.105
CRR073310Second white 21.912
CRR073311Second white 31.424
CRR073312Silver flowering 11.377
CRR073313Silver flowering 22.077
CRR073314Silver flowering 30.978
CRR073315Gold flowering 11.749
CRR073316Gold flowering 24.560
CRR073317Gold flowering 32.181
CRR073318Tawny withering 14.476
CRR073319Tawny withering 24.206
CRR073320Tawny withering 34.098