Detail information of GWHGAAZE016033


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007019241.11.58943E-25RING/FYVE/PHD-type zinc finger family protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q9SGH2|MBD9_ARATH0.00000004Methyl-CpG-binding domain-containing protein 9
trEMBLtr|A0A061FHB0|A0A061FHB0_THECC6E-26RING/FYVE/PHD-type zinc finger family protein, putative isoform 1 {ECO:0000313|EMBL:EOY16466.1}
TAIR10AT1G77250.17E-14RING/FYVE/PHD-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6737163767372274-
GWHAAZE00000004mRNA6737163767372274-
GWHAAZE00000004exon6737189867372274-
GWHAAZE00000004exon6737163767371766-
GWHAAZE00000004CDS6737189867372274-
GWHAAZE00000004CDS6737163767371766-
Transcript Sequence

Network for GWHGAAZE016033

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD26715.90E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.666
SRR3591706second leaf1.044
SRR3591707mature leaf1.358
SRR3591708Shoot apex1.420
SRR3591709Stem0.768
SRR3591710White floral bud1.338
SRR3591711White flower0.979
SRR3591712Green floral bud0.543
SRR3591713Yellow flower1.807
SRP173429 SRR8316895Juvenile bud stage 0.417
SRR8316896Juvenile bud stage 0.547
SRR8316897Juvenile bud stage 0.200
SRR8316894Third green stage 0.102
SRR8316900Third green stage 0.494
SRR8316901Third green stage 0.633
SRR8316898Complete white stage 0.144
SRR8316899Complete white stage 0.673
SRR8316903Complete white stage 0.101
SRR8316902Silver flowering stage0.063
SRR8316904Silver flowering stage0.137
SRR8316905Silver flowering stage0.222
SRR8316906Gold flowering stage 0.221
SRR8316907Gold flowering stage 0.778
SRR8316908Gold flowering stage 0.681
SRP132670SRR6706286Control0.327
SRR6706287Light intensity 50%0.073
SRR6706288Light intensity 20%0.140
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.079
CNS0095593Slightly white alabastrum(diploid) 20.275
CNS0095594Slightly white alabastrum(diploid) 30.763
CNS0095595Whole white alabastrum(diploid) 20.039
CNS0095596Whole white alabastrum(diploid) 30.101
CNS0095597Whole white alabastrum(diploid) 40.038
CNS0095598Silvery flower (diploied) 10.300
CNS0095599Silvery flower (diploied) 20.110
CNS0095600Silvery flower (diploied) 30.617
CNS0095601Golden flower (diploid) 10.036
CNS0095602Golden flower (diploid) 20.751
CNS0095603Golden flower (diploid) 30.424
CNS0095604Slightly white alabastrum(tetraploid) 10.321
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 32.142
CNS0095607Whole white alabastrum(tetraploid) 10.229
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.681
CNS0095610Silvery flower (tetraploid) 11.982
CNS0095611Silvery flower (tetraploid) 20.330
CNS0095612Silvery flower (tetraploid) 30.620
CNS0095613Golden flower (tetraploid) 10.563
CNS0095614Golden flower (tetraploid) 21.206
CNS0095615Golden flower (tetraploid) 31.002
CRA001975CRR073297Stem 11.120
CRR073298Stem 20.614
CRR073299Stem 31.659
CRR073300Leaf 11.042
CRR073301Leaf 20.832
CRR073302Leaf 30.412
CRR073303Juvenile bud 10.651
CRR073304Juvenile bud 20.037
CRR073305Juvenile bud 30.745
CRR073306Third green 10.000
CRR073307Third green 20.039
CRR073308Third green 30.207
CRR073309Second white 10.179
CRR073310Second white 20.230
CRR073311Second white 30.565
CRR073312Silver flowering 10.154
CRR073313Silver flowering 20.686
CRR073314Silver flowering 30.210
CRR073315Gold flowering 10.420
CRR073316Gold flowering 20.787
CRR073317Gold flowering 30.072
CRR073318Tawny withering 10.358
CRR073319Tawny withering 20.285
CRR073320Tawny withering 30.335