Detail information of GWHGAAZE016038


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002983546.10hypothetical protein SELMODRAFT_118485, partial [Selaginella moellendorffii]
Swissprottr|Q0GZS3|USP_CUCME3E-133UDP-sugar pyrophosphorylase
trEMBLtr|M8BEG3|M8BEG3_AEGTA0UDP-sugar pyrophosphorylase {ECO:0000313|EMBL:EMT12090.1}
TAIR10AT5G52560.12E-112UDP-sugar pyrophosphorylase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6743466367447320-
GWHAAZE00000004mRNA6743466367447320-
GWHAAZE00000004exon6743466367435009-
GWHAAZE00000004exon6743564667435885-
GWHAAZE00000004exon6743600567436085-
GWHAAZE00000004exon6743636267436421-
GWHAAZE00000004exon6743677267436877-
GWHAAZE00000004exon6743752967437605-
GWHAAZE00000004exon6744041567440475-
GWHAAZE00000004exon6744116967441233-
GWHAAZE00000004exon6744160067441727-
GWHAAZE00000004exon6744231867442417-
GWHAAZE00000004exon6744329167443431-
GWHAAZE00000004exon6744378367443899-
GWHAAZE00000004exon6744569167445795-
GWHAAZE00000004exon6744730367447320-
GWHAAZE00000004CDS6744730367447320-
GWHAAZE00000004CDS6744569167445795-
GWHAAZE00000004CDS6744378367443899-
GWHAAZE00000004CDS6744329167443431-
GWHAAZE00000004CDS6744231867442417-
GWHAAZE00000004CDS6744160067441727-
GWHAAZE00000004CDS6744116967441233-
GWHAAZE00000004CDS6744041567440475-
GWHAAZE00000004CDS6743752967437605-
GWHAAZE00000004CDS6743677267436877-
GWHAAZE00000004CDS6743636267436421-
GWHAAZE00000004CDS6743600567436085-
GWHAAZE00000004CDS6743564667435885-
GWHAAZE00000004CDS6743484267435009-
GWHAAZE00000004three_prime_UTR6743466367434841-
Transcript Sequence

Network for GWHGAAZE016038

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01704.19UDPGP1082046.70E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12447USP Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Pentose and glucuronate interconversionsmap00040
Galactose metabolismmap00052
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0070569molecular_functionuridylyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.519
SRR3591706second leaf11.364
SRR3591707mature leaf4.045
SRR3591708Shoot apex19.081
SRR3591709Stem26.671
SRR3591710White floral bud26.453
SRR3591711White flower8.012
SRR3591712Green floral bud58.892
SRR3591713Yellow flower4.121
SRP173429 SRR8316895Juvenile bud stage 19.577
SRR8316896Juvenile bud stage 22.787
SRR8316897Juvenile bud stage 14.932
SRR8316894Third green stage 12.771
SRR8316900Third green stage 54.974
SRR8316901Third green stage 52.314
SRR8316898Complete white stage 5.783
SRR8316899Complete white stage 31.231
SRR8316903Complete white stage 11.106
SRR8316902Silver flowering stage1.583
SRR8316904Silver flowering stage2.669
SRR8316905Silver flowering stage1.194
SRR8316906Gold flowering stage 2.769
SRR8316907Gold flowering stage 3.910
SRR8316908Gold flowering stage 3.726
SRP132670SRR6706286Control26.921
SRR6706287Light intensity 50%27.865
SRR6706288Light intensity 20%27.155
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.532
CNS0095593Slightly white alabastrum(diploid) 244.255
CNS0095594Slightly white alabastrum(diploid) 331.609
CNS0095595Whole white alabastrum(diploid) 250.985
CNS0095596Whole white alabastrum(diploid) 360.321
CNS0095597Whole white alabastrum(diploid) 451.400
CNS0095598Silvery flower (diploied) 17.781
CNS0095599Silvery flower (diploied) 211.279
CNS0095600Silvery flower (diploied) 34.743
CNS0095601Golden flower (diploid) 16.644
CNS0095602Golden flower (diploid) 22.791
CNS0095603Golden flower (diploid) 33.749
CNS0095604Slightly white alabastrum(tetraploid) 155.057
CNS0095605Slightly white alabastrum(tetraploid) 254.339
CNS0095606Slightly white alabastrum(tetraploid) 347.175
CNS0095607Whole white alabastrum(tetraploid) 175.781
CNS0095608Whole white alabastrum(tetraploid) 283.276
CNS0095609Whole white alabastrum(tetraploid) 370.496
CNS0095610Silvery flower (tetraploid) 14.695
CNS0095611Silvery flower (tetraploid) 26.527
CNS0095612Silvery flower (tetraploid) 38.552
CNS0095613Golden flower (tetraploid) 15.818
CNS0095614Golden flower (tetraploid) 26.395
CNS0095615Golden flower (tetraploid) 33.933
CRA001975CRR073297Stem 121.953
CRR073298Stem 220.169
CRR073299Stem 315.975
CRR073300Leaf 137.383
CRR073301Leaf 235.499
CRR073302Leaf 325.765
CRR073303Juvenile bud 136.386
CRR073304Juvenile bud 221.920
CRR073305Juvenile bud 327.909
CRR073306Third green 16.031
CRR073307Third green 210.832
CRR073308Third green 311.191
CRR073309Second white 13.372
CRR073310Second white 24.643
CRR073311Second white 33.595
CRR073312Silver flowering 16.163
CRR073313Silver flowering 27.335
CRR073314Silver flowering 34.216
CRR073315Gold flowering 14.608
CRR073316Gold flowering 24.142
CRR073317Gold flowering 33.781
CRR073318Tawny withering 116.328
CRR073319Tawny withering 213.526
CRR073320Tawny withering 318.535