Gene detail

Detail information of GWHGAAZE016044

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	3.75784E-75	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q9FZ52\|FDL3_ARATH	7E-16	F-box/FBD/LRR-repeat protein At1g16930
trEMBL	tr\|B9RI98\|B9RI98_RICCO	1E-75	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT1G16930.1	4E-15	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	67518497	67520649	+
GWHAAZE00000004	mRNA	67518497	67520649	+
GWHAAZE00000004	exon	67518497	67518535	+
GWHAAZE00000004	exon	67519009	67519893	+
GWHAAZE00000004	exon	67519993	67520136	+
GWHAAZE00000004	exon	67520303	67520649	+
GWHAAZE00000004	CDS	67518497	67518535	+
GWHAAZE00000004	CDS	67519009	67519893	+
GWHAAZE00000004	CDS	67519993	67520136	+
GWHAAZE00000004	CDS	67520303	67520602	+
GWHAAZE00000004	three_prime_UTR	67520603	67520649	+

Transcript Sequence
>GWHTAAZE016064 ATGGAGAAGGGTTTGCAGCATACCTCTAAATTGCAGAAGTGTAGCAGGAGCAGCAGCGAAGATGTGTATTTGGCTGATAGAATTAGTAAATTGCCAGATGAAATCCTTGAGATTATTTTATCACACCTGAGGATGAAAGAAGCAGTGCGTACCAGCGTTCTATCTCTTAGATGGAAAGACTTGTGGACATTTACGACCGGTAGCTTGGACTTTGATTTCGGGTCGAAGGTGTTATTGTTAATCAATGAGTTTGACCTGTCACAGATTCTCGAACCAGAGAGGGCAATCTACATAAGTAGGGTTAACAAAATCGTGAATGCACATAAAGGTGCCACAATTGAAGCATTCAAAGTTGAATTCGACTTGCAATTAAGCCATAAATCAGATATTGATAGTTGGATTAACTTTGCCCTACGAAAGAGAGTGCGGCAGCTTGAACTGAAATTGGTGCCAGCGGACTTGGTGGATGTGCCTGTAAATTTGAACAACTACTACCCTTTTCCGGATCAATCTTTGGGCGACTCGAATATCAGCTACCTTACAAGCCTGAATCTGGACTCCGTAAACTTGACCGGGGAAGTTCTATTGTACCTCCTATCCCATTGTCCCTTTCTTGAATTCATACGTATTTCAAGCTCGCCTGGCCTTGTAGAGGTCAGGGTTATTGCACCATGTGCAAAGTTGAAGCATTTAGAGATAGCCAATTGCGATCACTTGAAATCTTTAGATATTTCTTGTGCCCCAAATCTTACATCACTGGCATACTCTGGACGATATGACACGGGACTCTCTTTTAGGAACGTTCCCAATCTGTCCAATGTATCACTCGGCAGTTTTTACTGTGTTTACTGGGTTCAGAGATTCCATGAGCTACCTATTGCTCTCTCGCAGATAGAGAAGCTTCAATTGAGCTTGTGTACTACGTTTTCTCCCAGATTTCCCGAGTTTCCCCTGTTAAAGAATGTGAAGCAATTAGAGTTGAGAGTCCAAGCATTCGATCATCACAGTCTCCTTTCTTGCGCATCAGTGATGGAGGCATGCCCAAACCTGTATAGATTTTCAATGCGGTTTGATTGGCTGGGGAATCCCGAGGAAAGGGAGGTGCACCAGAGGGAAAATTGCAGTATGCACAAATGCCTTAAGGAGTTGGAATTGGTGTGGTTTCGTGGGAGTACAACCGACGTGGAGCTAGCTACCTATCTACTCTCTAGTGCCCCGTTTCTCAAAAAGATAACTGCCGACACTCGCAATCCTTATTTGTTGCCTGGAACCAACTCTGGCCGTTTTGAGGAGAATGTATCTGCAAAAGAGTGCGTGAGGCGGCTCGCAGAACAACTCTCCCCAGGCGCCGAATTATTGACACTTTGAGAGAGTAGTCATTGAATTATTTATTTTGTTCCTTCTTTTCTTTGATT

Network for GWHGAAZE016044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	27	62	3.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.033
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.117
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.076
	SRR3591710	White floral bud	1.080
	SRR3591711	White flower	2.355
	SRR3591712	Green floral bud	0.939
	SRR3591713	Yellow flower	1.151
SRP173429	SRR8316895	Juvenile bud stage	0.625
	SRR8316896	Juvenile bud stage	0.604
	SRR8316897	Juvenile bud stage	0.167
	SRR8316894	Third green stage	0.385
	SRR8316900	Third green stage	1.125
	SRR8316901	Third green stage	0.991
	SRR8316898	Complete white stage	0.455
	SRR8316899	Complete white stage	0.861
	SRR8316903	Complete white stage	0.519
	SRR8316902	Silver flowering stage	0.412
	SRR8316904	Silver flowering stage	0.313
	SRR8316905	Silver flowering stage	0.313
	SRR8316906	Gold flowering stage	0.837
	SRR8316907	Gold flowering stage	0.235
	SRR8316908	Gold flowering stage	0.396
SRP132670	SRR6706286	Control	0.175
	SRR6706287	Light intensity 50%	0.404
	SRR6706288	Light intensity 20%	0.963
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.842
	CNS0095593	Slightly white alabastrum(diploid) 2	0.595
	CNS0095594	Slightly white alabastrum(diploid) 3	0.741
	CNS0095595	Whole white alabastrum(diploid) 2	0.594
	CNS0095596	Whole white alabastrum(diploid) 3	0.681
	CNS0095597	Whole white alabastrum(diploid) 4	0.523
	CNS0095598	Silvery flower (diploied) 1	1.252
	CNS0095599	Silvery flower (diploied) 2	0.501
	CNS0095600	Silvery flower (diploied) 3	1.377
	CNS0095601	Golden flower (diploid) 1	0.330
	CNS0095602	Golden flower (diploid) 2	0.889
	CNS0095603	Golden flower (diploid) 3	0.789
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.252
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.560
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.291
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.197
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.640
	CNS0095610	Silvery flower (tetraploid) 1	0.863
	CNS0095611	Silvery flower (tetraploid) 2	1.471
	CNS0095612	Silvery flower (tetraploid) 3	0.962
	CNS0095613	Golden flower (tetraploid) 1	0.706
	CNS0095614	Golden flower (tetraploid) 2	0.639
	CNS0095615	Golden flower (tetraploid) 3	0.736
CRA001975	CRR073297	Stem 1	0.847
	CRR073298	Stem 2	0.953
	CRR073299	Stem 3	0.633
	CRR073300	Leaf 1	1.162
	CRR073301	Leaf 2	1.599
	CRR073302	Leaf 3	1.614
	CRR073303	Juvenile bud 1	1.946
	CRR073304	Juvenile bud 2	0.356
	CRR073305	Juvenile bud 3	0.624
	CRR073306	Third green 1	1.613
	CRR073307	Third green 2	0.403
	CRR073308	Third green 3	1.481
	CRR073309	Second white 1	1.979
	CRR073310	Second white 2	1.748
	CRR073311	Second white 3	1.391
	CRR073312	Silver flowering 1	1.004
	CRR073313	Silver flowering 2	0.802
	CRR073314	Silver flowering 3	1.221
	CRR073315	Gold flowering 1	0.376
	CRR073316	Gold flowering 2	0.210
	CRR073317	Gold flowering 3	0.179
	CRR073318	Tawny withering 1	0.048
	CRR073319	Tawny withering 2	0.124
	CRR073320	Tawny withering 3	0.130