Detail information of GWHGAAZE016056


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009783698.13.15852E-41PREDICTED: uncharacterized protein LOC104232248 isoform X2 [Nicotiana sylvestris]
Swissprottr|Q3ED78|C3H7_ARATH1E-15Zinc finger CCCH domain-containing protein 7
trEMBLtr|M1CDG6|M1CDG6_SOLTU2E-39Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400065147}
TAIR10AT1G21580.12E-11Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6810944668110272-
GWHAAZE00000004mRNA6810944668110272-
GWHAAZE00000004exon6810944668110148-
GWHAAZE00000004exon6811026868110272-
GWHAAZE00000004CDS6811026868110272-
GWHAAZE00000004CDS6810944668110148-
Transcript Sequence

Network for GWHGAAZE016056

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0267


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE016056.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.502
SRR3591706second leaf21.637
SRR3591707mature leaf21.467
SRR3591708Shoot apex25.230
SRR3591709Stem42.349
SRR3591710White floral bud27.055
SRR3591711White flower34.892
SRR3591712Green floral bud31.307
SRR3591713Yellow flower28.155
SRP173429 SRR8316895Juvenile bud stage 22.343
SRR8316896Juvenile bud stage 36.508
SRR8316897Juvenile bud stage 15.424
SRR8316894Third green stage 13.821
SRR8316900Third green stage 39.317
SRR8316901Third green stage 42.515
SRR8316898Complete white stage 13.084
SRR8316899Complete white stage 38.113
SRR8316903Complete white stage 38.256
SRR8316902Silver flowering stage21.541
SRR8316904Silver flowering stage29.946
SRR8316905Silver flowering stage14.158
SRR8316906Gold flowering stage 40.322
SRR8316907Gold flowering stage 46.961
SRR8316908Gold flowering stage 45.379
SRP132670SRR6706286Control25.302
SRR6706287Light intensity 50%29.522
SRR6706288Light intensity 20%27.905
CNP0000432CNS0095592Slightly white alabastrum(diploid) 146.525
CNS0095593Slightly white alabastrum(diploid) 244.859
CNS0095594Slightly white alabastrum(diploid) 335.477
CNS0095595Whole white alabastrum(diploid) 236.057
CNS0095596Whole white alabastrum(diploid) 336.545
CNS0095597Whole white alabastrum(diploid) 440.191
CNS0095598Silvery flower (diploied) 150.247
CNS0095599Silvery flower (diploied) 241.416
CNS0095600Silvery flower (diploied) 334.963
CNS0095601Golden flower (diploid) 147.283
CNS0095602Golden flower (diploid) 230.959
CNS0095603Golden flower (diploid) 328.543
CNS0095604Slightly white alabastrum(tetraploid) 144.920
CNS0095605Slightly white alabastrum(tetraploid) 237.592
CNS0095606Slightly white alabastrum(tetraploid) 349.898
CNS0095607Whole white alabastrum(tetraploid) 132.916
CNS0095608Whole white alabastrum(tetraploid) 232.130
CNS0095609Whole white alabastrum(tetraploid) 333.097
CNS0095610Silvery flower (tetraploid) 142.051
CNS0095611Silvery flower (tetraploid) 229.663
CNS0095612Silvery flower (tetraploid) 341.429
CNS0095613Golden flower (tetraploid) 144.338
CNS0095614Golden flower (tetraploid) 246.917
CNS0095615Golden flower (tetraploid) 335.898
CRA001975CRR073297Stem 132.162
CRR073298Stem 230.820
CRR073299Stem 310.082
CRR073300Leaf 139.297
CRR073301Leaf 242.108
CRR073302Leaf 38.064
CRR073303Juvenile bud 118.010
CRR073304Juvenile bud 27.259
CRR073305Juvenile bud 319.480
CRR073306Third green 16.996
CRR073307Third green 27.718
CRR073308Third green 37.469
CRR073309Second white 14.153
CRR073310Second white 210.138
CRR073311Second white 312.267
CRR073312Silver flowering 110.812
CRR073313Silver flowering 25.051
CRR073314Silver flowering 36.836
CRR073315Gold flowering 14.655
CRR073316Gold flowering 27.134
CRR073317Gold flowering 31.727
CRR073318Tawny withering 122.276
CRR073319Tawny withering 226.351
CRR073320Tawny withering 318.537