Detail information of GWHGAAZE016089


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007019344.10Sequence-specific DNA binding transcription factors [Theobroma cacao]
trEMBLtr|A0A061FPW2|A0A061FPW2_THECC0Sequence-specific DNA binding transcription factors {ECO:0000313|EMBL:EOY16569.1}
TAIR10AT1G43860.13E-135sequence-specific DNA binding transcription factors

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6898710868992271+
GWHAAZE00000004mRNA6898710868992271+
GWHAAZE00000004exon6898710868987241+
GWHAAZE00000004exon6898801868988147+
GWHAAZE00000004exon6898828668988486+
GWHAAZE00000004exon6898893868989105+
GWHAAZE00000004exon6899193368992271+
GWHAAZE00000004CDS6898710868987241+
GWHAAZE00000004CDS6898801868988147+
GWHAAZE00000004CDS6898828668988486+
GWHAAZE00000004CDS6898893868989105+
GWHAAZE00000004CDS6899193368992271+
Transcript Sequence

Network for GWHGAAZE016089

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01172.19SBDS161024.00E-30
PF09377.11SBDS_C1102272.30E-30
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14574SDO1, SBDS Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0042254biological_processribosome biogenesis
GO:0042256biological_processmature ribosome assembly

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.682
SRR3591706second leaf19.163
SRR3591707mature leaf22.074
SRR3591708Shoot apex33.873
SRR3591709Stem47.740
SRR3591710White floral bud58.417
SRR3591711White flower97.823
SRR3591712Green floral bud26.796
SRR3591713Yellow flower236.985
SRP173429 SRR8316895Juvenile bud stage 21.495
SRR8316896Juvenile bud stage 32.668
SRR8316897Juvenile bud stage 11.329
SRR8316894Third green stage 11.017
SRR8316900Third green stage 29.323
SRR8316901Third green stage 27.354
SRR8316898Complete white stage 22.110
SRR8316899Complete white stage 43.809
SRR8316903Complete white stage 44.005
SRR8316902Silver flowering stage36.773
SRR8316904Silver flowering stage42.001
SRR8316905Silver flowering stage25.367
SRR8316906Gold flowering stage 91.813
SRR8316907Gold flowering stage 72.610
SRR8316908Gold flowering stage 72.922
SRP132670SRR6706286Control38.911
SRR6706287Light intensity 50%34.975
SRR6706288Light intensity 20%35.287
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.834
CNS0095593Slightly white alabastrum(diploid) 224.564
CNS0095594Slightly white alabastrum(diploid) 325.015
CNS0095595Whole white alabastrum(diploid) 223.761
CNS0095596Whole white alabastrum(diploid) 321.230
CNS0095597Whole white alabastrum(diploid) 417.988
CNS0095598Silvery flower (diploied) 146.339
CNS0095599Silvery flower (diploied) 241.409
CNS0095600Silvery flower (diploied) 386.578
CNS0095601Golden flower (diploid) 163.671
CNS0095602Golden flower (diploid) 2110.567
CNS0095603Golden flower (diploid) 3114.298
CNS0095604Slightly white alabastrum(tetraploid) 120.600
CNS0095605Slightly white alabastrum(tetraploid) 215.356
CNS0095606Slightly white alabastrum(tetraploid) 323.497
CNS0095607Whole white alabastrum(tetraploid) 114.823
CNS0095608Whole white alabastrum(tetraploid) 211.973
CNS0095609Whole white alabastrum(tetraploid) 320.508
CNS0095610Silvery flower (tetraploid) 181.331
CNS0095611Silvery flower (tetraploid) 299.681
CNS0095612Silvery flower (tetraploid) 338.585
CNS0095613Golden flower (tetraploid) 180.539
CNS0095614Golden flower (tetraploid) 281.864
CNS0095615Golden flower (tetraploid) 3189.936
CRA001975CRR073297Stem 137.726
CRR073298Stem 233.338
CRR073299Stem 338.559
CRR073300Leaf 129.330
CRR073301Leaf 227.956
CRR073302Leaf 332.746
CRR073303Juvenile bud 136.477
CRR073304Juvenile bud 224.300
CRR073305Juvenile bud 333.782
CRR073306Third green 120.346
CRR073307Third green 224.015
CRR073308Third green 324.402
CRR073309Second white 127.913
CRR073310Second white 232.236
CRR073311Second white 331.306
CRR073312Silver flowering 135.315
CRR073313Silver flowering 235.068
CRR073314Silver flowering 332.865
CRR073315Gold flowering 123.839
CRR073316Gold flowering 231.373
CRR073317Gold flowering 328.050
CRR073318Tawny withering 133.214
CRR073319Tawny withering 236.490
CRR073320Tawny withering 338.096