Gene detail

Detail information of GWHGAAZE016120

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267914.1	0	PREDICTED: tubby-like F-box protein 8 [Vitis vinifera]
Swissprot	tr\|Q75HX5\|TLP8_ORYSJ	0	Tubby-like F-box protein 8
trEMBL	tr\|F6GY33\|F6GY33_VITVI	0	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT1G76900.2	2E-164	tubby like protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69677073	69681707	+
GWHAAZE00000004	mRNA	69677073	69681707	+
GWHAAZE00000004	exon	69677073	69677429	+
GWHAAZE00000004	exon	69678281	69678368	+
GWHAAZE00000004	exon	69680126	69680258	+
GWHAAZE00000004	exon	69680987	69681707	+
GWHAAZE00000004	CDS	69677073	69677429	+
GWHAAZE00000004	CDS	69678281	69678368	+
GWHAAZE00000004	CDS	69680126	69680258	+
GWHAAZE00000004	CDS	69680987	69681707	+

Transcript Sequence
>GWHTAAZE016140 ATGTCATTCCGGAGCATAGTTCGAGATGTAAGGGATGGTTTTGGGAGCTTTTCGAGACGGAGTTTTGAGGTTAGGCTTCCTGGTCATAACAGGGGAAAATCCCATGGGGCGGTCCATGAAGAATTACATGATAATAATGGACTGCTGGTCATTCAAAATAGCTGTTGGGCCAGCCTTCCCCCTGAGTTACTCCGCGATGTGATTAATAGGTTGGAGGCAAGTGAGAATACGTGGCCCGGTCGCAAGCATGTTGTAGCTTGTGCTGCCGTTTGCCGGTCTTGGAGGGAAATGTGCAAAGAAATTGTTAGAAGCCCAGAGTTCTCGGGAAAACTTACTTTCCCCGTCTCCCTAAAGCAGCCGGGGAATCGAGATGGAACCATTCAATGCTTCATTAAGAGAGACAAAGCTAATTTAACTTACCATCTTTTTCTTTGCCTGAGCCCTGCGTTGCTGGTAGAAAATGGGAAATTTCTTCTCTCTGCTAAACGAAATCGGAGAACTACCTGTACAGAGTATGTGATCTCAATGGATGCAGATAACATATCAAGGTCAAGCTGCACTTACATTGGAAAATTGAGGTCAAATTTCCTTGGCACAAAGTTCATAATTTACGACACACATCCCCCATACAATAGCGGTTACCTCTCACCACCTGGTCGTACAAGCCGCCGGTTCTCGAAAAAAGTGTCCCCCAAAGTCCCTTCTGGGAGCTTCAACATAGCCCAAATCAGTTATGAGCTTAACGTTTTAGGCACTCGGGGCCCACGCAGGATGAACTGCGTGATGAGCTCAATCCCAGTCTCGTCTCTCGAGCCAGGGTGCACTGTCCCAGGCCAGCCTGAGCTCCTCCCCCACACCCTGGAGGACTCGTTCAGAAGCAACATTTCCTGTTCTAAATCCATTGACAACTCGACCGAGTTCAGCTCCTCCCGGTTCTCAGACATTGCGGGCTTGGGCCCACAAAACGAGGGAGATGATGTGGCGGGGAAGGAAAGGCCTTTAGTTTTAAAAAACAAGCCACCTAGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTCAATTTCCGGGGAAGGGTGACCGTAGCCTCTGTCAAAAATTTCCAGCTGATTGCAGGCCCCACACATGCGGGTGCGCCGACACCCTCGCAGCCGGCGCAAGGGCCAGATCATGATAAGGTGATCTTGCAGTTTGGGAAGGTGGGTAAGGATATGTTCACGATGGATTATCGGTATCCACTCTCAGCTTTTCAAGCTTTTGCGATATGTTTGAGCAGCTTTGATACGAAACTTGCATGCGAATAA

Network for GWHGAAZE016120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	55	107	1.40E-10
PF01167.19	Tub	119	427	1.10E-112

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.769
	SRR3591706	second leaf	18.927
	SRR3591707	mature leaf	17.310
	SRR3591708	Shoot apex	20.771
	SRR3591709	Stem	24.519
	SRR3591710	White floral bud	19.157
	SRR3591711	White flower	19.326
	SRR3591712	Green floral bud	55.464
	SRR3591713	Yellow flower	16.722
SRP173429	SRR8316895	Juvenile bud stage	21.598
	SRR8316896	Juvenile bud stage	65.174
	SRR8316897	Juvenile bud stage	33.898
	SRR8316894	Third green stage	29.042
	SRR8316900	Third green stage	90.828
	SRR8316901	Third green stage	104.540
	SRR8316898	Complete white stage	13.628
	SRR8316899	Complete white stage	30.057
	SRR8316903	Complete white stage	18.363
	SRR8316902	Silver flowering stage	9.959
	SRR8316904	Silver flowering stage	18.373
	SRR8316905	Silver flowering stage	7.307
	SRR8316906	Gold flowering stage	24.534
	SRR8316907	Gold flowering stage	24.551
	SRR8316908	Gold flowering stage	18.961
SRP132670	SRR6706286	Control	54.661
	SRR6706287	Light intensity 50%	46.618
	SRR6706288	Light intensity 20%	44.164
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	96.877
	CNS0095593	Slightly white alabastrum(diploid) 2	79.102
	CNS0095594	Slightly white alabastrum(diploid) 3	108.199
	CNS0095595	Whole white alabastrum(diploid) 2	97.120
	CNS0095596	Whole white alabastrum(diploid) 3	129.019
	CNS0095597	Whole white alabastrum(diploid) 4	76.399
	CNS0095598	Silvery flower (diploied) 1	32.027
	CNS0095599	Silvery flower (diploied) 2	27.596
	CNS0095600	Silvery flower (diploied) 3	37.257
	CNS0095601	Golden flower (diploid) 1	24.902
	CNS0095602	Golden flower (diploid) 2	43.388
	CNS0095603	Golden flower (diploid) 3	40.471
	CNS0095604	Slightly white alabastrum(tetraploid) 1	163.208
	CNS0095605	Slightly white alabastrum(tetraploid) 2	164.206
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.408
	CNS0095607	Whole white alabastrum(tetraploid) 1	115.198
	CNS0095608	Whole white alabastrum(tetraploid) 2	54.658
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.864
	CNS0095610	Silvery flower (tetraploid) 1	38.454
	CNS0095611	Silvery flower (tetraploid) 2	39.611
	CNS0095612	Silvery flower (tetraploid) 3	36.927
	CNS0095613	Golden flower (tetraploid) 1	25.651
	CNS0095614	Golden flower (tetraploid) 2	41.130
	CNS0095615	Golden flower (tetraploid) 3	44.046
CRA001975	CRR073297	Stem 1	63.045
	CRR073298	Stem 2	72.381
	CRR073299	Stem 3	58.073
	CRR073300	Leaf 1	79.723
	CRR073301	Leaf 2	89.879
	CRR073302	Leaf 3	83.182
	CRR073303	Juvenile bud 1	28.289
	CRR073304	Juvenile bud 2	25.993
	CRR073305	Juvenile bud 3	40.822
	CRR073306	Third green 1	33.449
	CRR073307	Third green 2	23.706
	CRR073308	Third green 3	29.073
	CRR073309	Second white 1	39.879
	CRR073310	Second white 2	30.113
	CRR073311	Second white 3	30.090
	CRR073312	Silver flowering 1	60.041
	CRR073313	Silver flowering 2	73.084
	CRR073314	Silver flowering 3	53.515
	CRR073315	Gold flowering 1	37.345
	CRR073316	Gold flowering 2	49.033
	CRR073317	Gold flowering 3	47.467
	CRR073318	Tawny withering 1	74.072
	CRR073319	Tawny withering 2	51.797
	CRR073320	Tawny withering 3	69.923