Gene detail

Detail information of GWHGAAZE016121

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN82256.1	2.8272E-162	hypothetical protein VITISV_009404 [Vitis vinifera]
Swissprot	tr\|Q75HX5\|TLP8_ORYSJ	1E-133	Tubby-like F-box protein 8
trEMBL	tr\|A5AJR7\|A5AJR7_VITVI	1E-162	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT1G25280.1	5E-106	tubby like protein 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69684364	69688160	+
GWHAAZE00000004	mRNA	69684364	69688160	+
GWHAAZE00000004	exon	69684364	69684483	+
GWHAAZE00000004	exon	69684756	69684843	+
GWHAAZE00000004	exon	69686613	69686679	+
GWHAAZE00000004	exon	69687440	69688160	+
GWHAAZE00000004	CDS	69684364	69684483	+
GWHAAZE00000004	CDS	69684756	69684843	+
GWHAAZE00000004	CDS	69686613	69686679	+
GWHAAZE00000004	CDS	69687440	69688160	+

Transcript Sequence
>GWHTAAZE016141 ATGAGGCTTGCCTTTGATTTCAACAGATCTAACCTCCGGGAATCGTCGGATCATGGAGTTAGGGCTGACGGAGTAGCAGTTACCAATGTAGATCCGCCTCCGGCACCATCTCTCGATCTCCCGGGGAATCGAGATCGAACCATTCAATGCTTCATTAAGAGAGACAAAGCTAATTTAACTTACCATCTTTTTCTTTGCCTGAGCCCTGAGTATGTGATCTCAATGGATGCAGATAACATATCAAGGTCAAGCTGCACTTACATTGGAAAATTGAGGTCAAATTTCCTTGGCACAAAGTTCATAATTTACGATACACATCCCCCATACAATAGCGGTCACCTCTCACCACCGGGTCGTACAAGCCGCCAGTTCTTGAAAAAAGTGTCCCCCAAAGTCCCTTCTGGGAGCTTCAACATAGCCCAAATCAGTTATGAGCTTAACGTTTTACGCACTCGGGGCCCACGCAGGATGAACTGCATGATGAGCTCAATCCCAGTCTCGTCTCTCGAGCCAGGGTGCACTGTCCCAGGCCAGCCTGAGCTCCTCCCCCACACCCTGGAGGACTCGTTCAGAAGCAACATTTCCTGTTCTAAATCCATTGACAACTCGACCGAGTTCAGCTCCTCCCGGTTCTCAGACATTGCGGGCTTGGGCCCACAAAACGAGGGAGATGATGTGGTGGGGAAGGAAAGGCCTTTAGTTTTAAAAAACAAGCCACCTAGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTCAATTTCCGGGGAAGGGTGACTGTAGCCTCTGTCAAGAATTTCCAGCTGATTGCAGGCCTCGCACATGCGGGTGCGTCGACACCCTCGCAGCCGGCGCAAGGGCCAGATCATGATAAGGTGATCTTGCAGTTTGGGAAGGTGGGTAAGGATATGTTCACGATGGATTATCGGTATCCACTCTCAGCTTTTCAAGCTTTTGTGATATGTTTGAGCAGCTTTGATACGAAACTTGCATGCGAATAA

Network for GWHGAAZE016121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01167.19	Tub	41	326	1.20E-94

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.229
	SRR3591706	second leaf	4.020
	SRR3591707	mature leaf	3.080
	SRR3591708	Shoot apex	6.931
	SRR3591709	Stem	7.920
	SRR3591710	White floral bud	6.690
	SRR3591711	White flower	4.384
	SRR3591712	Green floral bud	12.540
	SRR3591713	Yellow flower	5.362
SRP173429	SRR8316895	Juvenile bud stage	5.438
	SRR8316896	Juvenile bud stage	10.809
	SRR8316897	Juvenile bud stage	6.964
	SRR8316894	Third green stage	4.382
	SRR8316900	Third green stage	16.880
	SRR8316901	Third green stage	14.938
	SRR8316898	Complete white stage	5.474
	SRR8316899	Complete white stage	11.556
	SRR8316903	Complete white stage	7.012
	SRR8316902	Silver flowering stage	2.862
	SRR8316904	Silver flowering stage	4.092
	SRR8316905	Silver flowering stage	1.839
	SRR8316906	Gold flowering stage	5.710
	SRR8316907	Gold flowering stage	7.646
	SRR8316908	Gold flowering stage	6.993
SRP132670	SRR6706286	Control	15.833
	SRR6706287	Light intensity 50%	13.544
	SRR6706288	Light intensity 20%	14.371
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.350
	CNS0095593	Slightly white alabastrum(diploid) 2	9.944
	CNS0095594	Slightly white alabastrum(diploid) 3	8.644
	CNS0095595	Whole white alabastrum(diploid) 2	9.947
	CNS0095596	Whole white alabastrum(diploid) 3	12.865
	CNS0095597	Whole white alabastrum(diploid) 4	10.742
	CNS0095598	Silvery flower (diploied) 1	7.624
	CNS0095599	Silvery flower (diploied) 2	5.266
	CNS0095600	Silvery flower (diploied) 3	9.329
	CNS0095601	Golden flower (diploid) 1	4.124
	CNS0095602	Golden flower (diploid) 2	9.320
	CNS0095603	Golden flower (diploid) 3	9.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.932
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.824
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.082
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.387
	CNS0095610	Silvery flower (tetraploid) 1	5.949
	CNS0095611	Silvery flower (tetraploid) 2	8.871
	CNS0095612	Silvery flower (tetraploid) 3	11.382
	CNS0095613	Golden flower (tetraploid) 1	4.317
	CNS0095614	Golden flower (tetraploid) 2	6.335
	CNS0095615	Golden flower (tetraploid) 3	6.343
CRA001975	CRR073297	Stem 1	11.661
	CRR073298	Stem 2	11.153
	CRR073299	Stem 3	10.506
	CRR073300	Leaf 1	12.739
	CRR073301	Leaf 2	12.849
	CRR073302	Leaf 3	11.838
	CRR073303	Juvenile bud 1	10.146
	CRR073304	Juvenile bud 2	8.216
	CRR073305	Juvenile bud 3	8.938
	CRR073306	Third green 1	8.490
	CRR073307	Third green 2	8.705
	CRR073308	Third green 3	7.705
	CRR073309	Second white 1	5.642
	CRR073310	Second white 2	4.931
	CRR073311	Second white 3	6.772
	CRR073312	Silver flowering 1	8.307
	CRR073313	Silver flowering 2	8.443
	CRR073314	Silver flowering 3	8.602
	CRR073315	Gold flowering 1	6.960
	CRR073316	Gold flowering 2	7.726
	CRR073317	Gold flowering 3	6.148
	CRR073318	Tawny withering 1	13.261
	CRR073319	Tawny withering 2	11.470
	CRR073320	Tawny withering 3	15.599