Gene detail

Detail information of GWHGAAZE016131

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074751.1	3.5294E-145	PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Sesamum indicum]
Swissprot	tr\|Q94JQ6\|CESA6_ARATH	8E-100	Cellulose synthase A catalytic subunit 6 [UDP-forming]
trEMBL	tr\|A0A061FHH1\|A0A061FHH1_THECC	1E-145	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}
TAIR10	AT5G64740.1	1E-84	cellulose synthase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69857010	69859209	+
GWHAAZE00000004	mRNA	69857010	69859209	+
GWHAAZE00000004	exon	69857010	69857377	+
GWHAAZE00000004	exon	69857844	69858039	+
GWHAAZE00000004	exon	69858135	69858361	+
GWHAAZE00000004	exon	69858824	69858926	+
GWHAAZE00000004	exon	69859019	69859209	+
GWHAAZE00000004	five_prime_UTR	69857010	69857296	+
GWHAAZE00000004	CDS	69857297	69857377	+
GWHAAZE00000004	CDS	69857844	69858039	+
GWHAAZE00000004	CDS	69858135	69858361	+
GWHAAZE00000004	CDS	69858824	69858926	+
GWHAAZE00000004	CDS	69859019	69859209	+

Transcript Sequence
>GWHTAAZE016151 TTTTCTTGTGTGTATATGTAGTGTATACCTATACGTAGTTTCTGTTCACCTATCGTTTTCAGGGTCTTTCTTTAATGTGAGGTTGGTATTTCTTGTGAAGTGGGGTGTTTTAAGAGAGTGGCCTTGCCTAAAGAAAGAGCAAAAAAAAAAAGGGCAAAGCTCTGATTTTTCCTCTTTCTTCTTTCTCTCTTGATGGGTCTCTTTTTCTTGTGTTTAAGTGAGTTGGGTCTTTGTTGATTTTGAAGGGTTTTGTGTCTGTGTGTTTGTGTCGGTGAGTGTCGGTTCTGATGGATACTAAAGGAAGATTAATTGCCGGTTCACACAATAGGAATGAGTTTGTTCTCATCAATGCTGATGAAGTTGGCCGAGTGACTTCTGTGAAAGAGCTAAGTGGACAGATTTGTCAGATTTGCGGAGATGAGATTGAAATAACAGTAGATGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTTCCTGTTTGTAGACCTTGCTACGAGTACGAAAGAAGAGAGGGAAATCAAGCTTGCCCTCAGTGCAAAACTAGATACAAGCGCATCAAAGGGAGTCCAAGAGTTGATGGTGATGAAGAAGAGGATGAATTTGATGATTTGGACAATGAGTTTGACTTTGGGAGCAATGAGCGAAGGGATCCGCAACATCTTGCAGAGTCTGTGCTTTCTGCTCGCCTTAATATCGGACGTGCTAATACTTCTGGATTCACTACACCTTCTGAGATGGATGCAGCTTCCCTTAACCCTGAAATCCCTCTTCTTACCTATGGTCAAGAGGATGATGGGATTTCAGCTGACAAGCATGCTCTTATAATTCCACCAATAATGGGCCGTGCAAAGCGCGTCCACCCTATGCCATTTTCTGATTCCTCAATCTCTTTGCCACCAAGGCCAATGGATCCTAAGAAAGACTTAGCAGTGTATGGATACGGTACTGTGGCTTGGAAAGAAAGAATGGAGGAGTGGAGGAAAAGGCAGAATGATAAACTTCAAATGGTTAAACACGAAGGACAAATCAACGGTGGGAACAATGATGATGATGAAATGGACGATCCCGATTTGCCCAAGTAG

Network for GWHGAAZE016131

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14569.7	zf-UDP	30	105	6.90E-42

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	120.212
	SRR3591706	second leaf	108.343
	SRR3591707	mature leaf	41.444
	SRR3591708	Shoot apex	50.819
	SRR3591709	Stem	56.303
	SRR3591710	White floral bud	19.931
	SRR3591711	White flower	14.940
	SRR3591712	Green floral bud	31.983
	SRR3591713	Yellow flower	2.084
SRP173429	SRR8316895	Juvenile bud stage	41.329
	SRR8316896	Juvenile bud stage	40.074
	SRR8316897	Juvenile bud stage	27.763
	SRR8316894	Third green stage	15.866
	SRR8316900	Third green stage	27.436
	SRR8316901	Third green stage	34.595
	SRR8316898	Complete white stage	3.365
	SRR8316899	Complete white stage	38.820
	SRR8316903	Complete white stage	10.625
	SRR8316902	Silver flowering stage	1.915
	SRR8316904	Silver flowering stage	3.757
	SRR8316905	Silver flowering stage	1.707
	SRR8316906	Gold flowering stage	3.211
	SRR8316907	Gold flowering stage	1.946
	SRR8316908	Gold flowering stage	2.991
SRP132670	SRR6706286	Control	18.226
	SRR6706287	Light intensity 50%	27.293
	SRR6706288	Light intensity 20%	31.371
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.103
	CNS0095593	Slightly white alabastrum(diploid) 2	15.257
	CNS0095594	Slightly white alabastrum(diploid) 3	8.470
	CNS0095595	Whole white alabastrum(diploid) 2	16.210
	CNS0095596	Whole white alabastrum(diploid) 3	5.802
	CNS0095597	Whole white alabastrum(diploid) 4	12.816
	CNS0095598	Silvery flower (diploied) 1	30.193
	CNS0095599	Silvery flower (diploied) 2	36.780
	CNS0095600	Silvery flower (diploied) 3	19.610
	CNS0095601	Golden flower (diploid) 1	19.064
	CNS0095602	Golden flower (diploid) 2	23.550
	CNS0095603	Golden flower (diploid) 3	23.204
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.645
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.604
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.039
	CNS0095610	Silvery flower (tetraploid) 1	5.233
	CNS0095611	Silvery flower (tetraploid) 2	7.091
	CNS0095612	Silvery flower (tetraploid) 3	4.662
	CNS0095613	Golden flower (tetraploid) 1	0.346
	CNS0095614	Golden flower (tetraploid) 2	3.159
	CNS0095615	Golden flower (tetraploid) 3	2.529
CRA001975	CRR073297	Stem 1	59.205
	CRR073298	Stem 2	55.721
	CRR073299	Stem 3	40.759
	CRR073300	Leaf 1	61.224
	CRR073301	Leaf 2	54.262
	CRR073302	Leaf 3	48.570
	CRR073303	Juvenile bud 1	38.993
	CRR073304	Juvenile bud 2	37.783
	CRR073305	Juvenile bud 3	69.169
	CRR073306	Third green 1	10.096
	CRR073307	Third green 2	9.346
	CRR073308	Third green 3	16.610
	CRR073309	Second white 1	3.825
	CRR073310	Second white 2	3.616
	CRR073311	Second white 3	2.117
	CRR073312	Silver flowering 1	2.325
	CRR073313	Silver flowering 2	2.242
	CRR073314	Silver flowering 3	1.517
	CRR073315	Gold flowering 1	33.839
	CRR073316	Gold flowering 2	62.885
	CRR073317	Gold flowering 3	33.904
	CRR073318	Tawny withering 1	55.413
	CRR073319	Tawny withering 2	24.627
	CRR073320	Tawny withering 3	71.811