Detail information of GWHGAAZE016153


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI22760.37.493E-115unnamed protein product [Vitis vinifera]
Swissprottr|Q9SQI2|GIGAN_ARATH1E-99Protein GIGANTEA
trEMBLtr|R4PWG1|R4PWG1_CHRMO5E-111Gigantea-like protein {ECO:0000313|EMBL:AGL61504.1}
TAIR10AT1G22770.17E-87gigantea protein (GI)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7036489170367802-
GWHAAZE00000004mRNA7036489170367802-
GWHAAZE00000004exon7036771070367802-
GWHAAZE00000004exon7036699070367061-
GWHAAZE00000004exon7036675870366812-
GWHAAZE00000004exon7036650470366646-
GWHAAZE00000004exon7036579670366067-
GWHAAZE00000004exon7036489170364954-
GWHAAZE00000004CDS7036771070367802-
GWHAAZE00000004CDS7036699070367061-
GWHAAZE00000004CDS7036675870366812-
GWHAAZE00000004CDS7036650470366646-
GWHAAZE00000004CDS7036579670366067-
GWHAAZE00000004CDS7036489170364954-
Transcript Sequence

Network for GWHGAAZE016153

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12124GI Circadian rhythm - plant map04712

Gene Ontology

GO term OntologyName
GO:2000028biological_processregulation of photoperiodism, flowering

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.734
SRR3591706second leaf12.868
SRR3591707mature leaf19.506
SRR3591708Shoot apex14.880
SRR3591709Stem19.044
SRR3591710White floral bud58.945
SRR3591711White flower55.682
SRR3591712Green floral bud37.334
SRR3591713Yellow flower35.475
SRP173429 SRR8316895Juvenile bud stage 27.308
SRR8316896Juvenile bud stage 33.666
SRR8316897Juvenile bud stage 13.527
SRR8316894Third green stage 17.490
SRR8316900Third green stage 38.075
SRR8316901Third green stage 37.675
SRR8316898Complete white stage 18.469
SRR8316899Complete white stage 53.108
SRR8316903Complete white stage 51.230
SRR8316902Silver flowering stage19.501
SRR8316904Silver flowering stage40.733
SRR8316905Silver flowering stage17.324
SRR8316906Gold flowering stage 47.988
SRR8316907Gold flowering stage 42.144
SRR8316908Gold flowering stage 40.360
SRP132670SRR6706286Control55.019
SRR6706287Light intensity 50%55.127
SRR6706288Light intensity 20%58.165
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.082
CNS0095593Slightly white alabastrum(diploid) 26.966
CNS0095594Slightly white alabastrum(diploid) 36.128
CNS0095595Whole white alabastrum(diploid) 211.404
CNS0095596Whole white alabastrum(diploid) 37.522
CNS0095597Whole white alabastrum(diploid) 411.020
CNS0095598Silvery flower (diploied) 130.084
CNS0095599Silvery flower (diploied) 216.990
CNS0095600Silvery flower (diploied) 378.357
CNS0095601Golden flower (diploid) 117.139
CNS0095602Golden flower (diploid) 277.018
CNS0095603Golden flower (diploid) 377.965
CNS0095604Slightly white alabastrum(tetraploid) 111.440
CNS0095605Slightly white alabastrum(tetraploid) 29.053
CNS0095606Slightly white alabastrum(tetraploid) 335.067
CNS0095607Whole white alabastrum(tetraploid) 16.219
CNS0095608Whole white alabastrum(tetraploid) 26.203
CNS0095609Whole white alabastrum(tetraploid) 325.226
CNS0095610Silvery flower (tetraploid) 159.588
CNS0095611Silvery flower (tetraploid) 285.219
CNS0095612Silvery flower (tetraploid) 342.689
CNS0095613Golden flower (tetraploid) 118.966
CNS0095614Golden flower (tetraploid) 241.293
CNS0095615Golden flower (tetraploid) 397.357
CRA001975CRR073297Stem 150.745
CRR073298Stem 246.594
CRR073299Stem 336.237
CRR073300Leaf 142.909
CRR073301Leaf 236.079
CRR073302Leaf 330.754
CRR073303Juvenile bud 121.237
CRR073304Juvenile bud 227.208
CRR073305Juvenile bud 353.056
CRR073306Third green 12.420
CRR073307Third green 24.946
CRR073308Third green 37.890
CRR073309Second white 13.488
CRR073310Second white 25.024
CRR073311Second white 38.141
CRR073312Silver flowering 18.466
CRR073313Silver flowering 28.242
CRR073314Silver flowering 39.540
CRR073315Gold flowering 19.914
CRR073316Gold flowering 231.020
CRR073317Gold flowering 329.358
CRR073318Tawny withering 114.051
CRR073319Tawny withering 211.411
CRR073320Tawny withering 315.216