Gene detail

Detail information of GWHGAAZE016160

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI29360.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|O64380\|PABP3_ARATH	0	Polyadenylate-binding protein 3
trEMBL	tr\|F6HJE0\|F6HJE0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52339.1}
TAIR10	AT1G22760.1	3E-179	poly(A) binding protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	70524516	70530102	-
GWHAAZE00000004	mRNA	70524516	70530102	-
GWHAAZE00000004	exon	70529841	70530102	-
GWHAAZE00000004	exon	70527800	70528575	-
GWHAAZE00000004	exon	70527616	70527693	-
GWHAAZE00000004	exon	70527412	70527501	-
GWHAAZE00000004	exon	70526010	70526306	-
GWHAAZE00000004	exon	70525351	70525551	-
GWHAAZE00000004	exon	70524516	70524740	-
GWHAAZE00000004	CDS	70529841	70530102	-
GWHAAZE00000004	CDS	70527800	70528575	-
GWHAAZE00000004	CDS	70527616	70527693	-
GWHAAZE00000004	CDS	70527412	70527501	-
GWHAAZE00000004	CDS	70526010	70526306	-
GWHAAZE00000004	CDS	70525351	70525551	-
GWHAAZE00000004	CDS	70524516	70524740	-

Transcript Sequence
>GWHTAAZE016180 ATGGCAACGGCGATTATCAATCCACCACCAGTTTCGGTGCCGGCGGCTACAGCACCGTCTACGCCGCAGGCGGCGGCCGGAGCGGGAGGTTTCGGCAATGTGTCGCTGTACGTAGGGGATCTCGAGTCCAGCGTGAACGATGCGCAATTGTACGATCTGTTCAATCAGGTGGCGCAAGTGGTGTCAGTTAGGGTTTGTAGGGATCAGACGAGGCGGACTTCTCTTGGTTATGCTTATGTCAATTTCAGTAATCCGCAAGACGCTGCTAATGCAAGGGAGCTTTTGAATTTCACTCCCATTAACGGGAAACCTATTAGGATTATGTTTTCGCATCGTGATCCTAGCATGCGAAAAAGCGGGCATGCTAACATATTCATCAAGAATTTGGACCCATTGATAGATAACAAGGCATTGCACGACACTTTTGCTGTATTTGGGACCGTGCTTTCTTGCAAGGTAGCCATAGATGGCAATGGTCAATCAAAAGGGTATGGATTTGTACAATTTGATCAAGAGGAATCTGCTATGAACGCCATCAAACAATTAGATGGCATGCTGCTTAATGACAAACAAGTGTATGTGGGTTTCTTTGTTCGTCAGCAAGAAAGGAGCCATGCTAATGGATCACCAAAATTCACTAATGTATTTGTGAAAAATCTTTCCGAAACAACCACTGATGAAGTCCTTAACGATTTTTTTGGCAAGTGTGGTTCTATCACCAGTTCGGTTGTTATGAGGGATGCAAATGGTAAGTCCAAATGTTTTGGATTTGTTAATTTTCAGAATCCGGATGCTGCTGCTGCTGCAGTTGAGAAGTTGAATGGTGCCTCGTTGAACGACAAGGTTTTGTATGTCGGGAAGGCCCAAAGGAAAAGCGAAAGGGAAGCAGAATTGAGAGCTAAATTTGAACAAGAAAGAAAAAGTAGATTCGAAAAGTTGCAAGGTGCTAATTTGTATATGAAAAATCTTGATGATGATATAGATGATGAAAAGCTTAAGGAAATGTTCTCGGAGTTTGGAACTGTGACATCATGCAAGGTCATGGTTGATCCACAAGGGGTGAGCAAGGGCTCTGGCTTTGTGGCCTTCTCTACGCCAGAGGAAGCAACAAGAGCTTTGACTGAAATGAATGGGAAGATGATTGGGCGAAAACCTCTGTTTGTTGCTGTGGCTGAACGCAAGGAGGACAGAAGAGCTCGACTGCAGGCACAGTTTGCTCAAGCACGGGCACCTGGTGCAGTGACACCATTGCCCACAGGAATGCATGGGTTCCACCCTGGGGCACCTAGGCTTGGTGCCCCTCAACAGCTATACATTGGTCAAGGTGCCCCTGGGCTGATACCCCCTCAGCCTGCTGCCGGTTATGGCTTCCAGCAGCATCTCTTGCCTGGAATTCGCCCCCCAAGTTTCATTATGCCCTATCATCAACTTCAAAGGCAAGGTCAACCTGGGCAGCGATTGGGTGGAAGGAGAGGTGGAAACACTCCCCAGATGCAGCAGCAGATGATGCATAGGAACTCCAATGCGGGTTTCAACAGATACATGACCAATGGCAGAAACAGCATGGATGCTCCGTCTATGGTCCCACAAGCCCTGGTGGGACCAATGATGCCATTGCCAGCAGACATCCAGCGTTCTGGACCCATGCCCATGTCAACCCTTGCTTCTGCCCTTGCATCTGCACCTCTAGAAACTCAGCGTTTGATGCTGGGGGAGCAACTGTTTCCACTCGTGGAGCGTATCGAGCGTGAGCACACTGGAAAAGTGACAGGTATGCTGCTGGAGATGGACCAGACTGAGGTACTCCATCTCATTGAATCCCCAGACGCTTTGAAGAAGAAAGTTTCTGAGGCCATGGATGTGCTCCGTTTGGCATCGTCAGGTTCTGACGTTGGTGATCAGCTCGGCTCATTGTCCCTGAATGAATGA

Network for GWHGAAZE016160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	36	106	1.30E-15
PF00076.23	RRM_1	124	192	3.10E-18
PF00076.23	RRM_1	215	283	9.50E-22
PF00076.23	RRM_1	318	385	2.10E-20
PF00658.19	PABP	556	622	6.00E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.480
	SRR3591706	second leaf	0.738
	SRR3591707	mature leaf	0.458
	SRR3591708	Shoot apex	3.975
	SRR3591709	Stem	2.314
	SRR3591710	White floral bud	11.481
	SRR3591711	White flower	3.319
	SRR3591712	Green floral bud	30.458
	SRR3591713	Yellow flower	2.612
SRP173429	SRR8316895	Juvenile bud stage	22.025
	SRR8316896	Juvenile bud stage	38.120
	SRR8316897	Juvenile bud stage	20.007
	SRR8316894	Third green stage	10.570
	SRR8316900	Third green stage	29.658
	SRR8316901	Third green stage	29.469
	SRR8316898	Complete white stage	3.046
	SRR8316899	Complete white stage	12.397
	SRR8316903	Complete white stage	3.941
	SRR8316902	Silver flowering stage	1.214
	SRR8316904	Silver flowering stage	1.914
	SRR8316905	Silver flowering stage	1.003
	SRR8316906	Gold flowering stage	2.539
	SRR8316907	Gold flowering stage	1.831
	SRR8316908	Gold flowering stage	1.421
SRP132670	SRR6706286	Control	19.881
	SRR6706287	Light intensity 50%	19.105
	SRR6706288	Light intensity 20%	19.932
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.113
	CNS0095593	Slightly white alabastrum(diploid) 2	24.855
	CNS0095594	Slightly white alabastrum(diploid) 3	40.163
	CNS0095595	Whole white alabastrum(diploid) 2	26.006
	CNS0095596	Whole white alabastrum(diploid) 3	28.892
	CNS0095597	Whole white alabastrum(diploid) 4	31.640
	CNS0095598	Silvery flower (diploied) 1	3.897
	CNS0095599	Silvery flower (diploied) 2	3.460
	CNS0095600	Silvery flower (diploied) 3	4.713
	CNS0095601	Golden flower (diploid) 1	3.330
	CNS0095602	Golden flower (diploid) 2	4.237
	CNS0095603	Golden flower (diploid) 3	4.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.212
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.495
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	51.856
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.998
	CNS0095610	Silvery flower (tetraploid) 1	3.531
	CNS0095611	Silvery flower (tetraploid) 2	2.527
	CNS0095612	Silvery flower (tetraploid) 3	3.482
	CNS0095613	Golden flower (tetraploid) 1	1.525
	CNS0095614	Golden flower (tetraploid) 2	3.159
	CNS0095615	Golden flower (tetraploid) 3	2.119
CRA001975	CRR073297	Stem 1	31.569
	CRR073298	Stem 2	27.171
	CRR073299	Stem 3	29.280
	CRR073300	Leaf 1	33.776
	CRR073301	Leaf 2	26.733
	CRR073302	Leaf 3	29.853
	CRR073303	Juvenile bud 1	32.139
	CRR073304	Juvenile bud 2	21.028
	CRR073305	Juvenile bud 3	25.122
	CRR073306	Third green 1	5.817
	CRR073307	Third green 2	6.680
	CRR073308	Third green 3	5.974
	CRR073309	Second white 1	3.850
	CRR073310	Second white 2	2.415
	CRR073311	Second white 3	2.326
	CRR073312	Silver flowering 1	4.450
	CRR073313	Silver flowering 2	4.194
	CRR073314	Silver flowering 3	4.326
	CRR073315	Gold flowering 1	4.087
	CRR073316	Gold flowering 2	4.861
	CRR073317	Gold flowering 3	2.273
	CRR073318	Tawny withering 1	3.593
	CRR073319	Tawny withering 2	3.719
	CRR073320	Tawny withering 3	3.261