Detail information of GWHGAAZE016161


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAA98168.11.0022E-126RAB7A [Lotus japonicus]
Swissprottr|Q43463|RAB7_SOYBN6E-127Ras-related protein Rab7
trEMBLtr|Q40211|Q40211_LOTJA4E-127RAB7A {ECO:0000313|EMBL:CAA98168.1}
TAIR10AT4G09720.17E-92RAB GTPase homolog G3A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7053316170537237-
GWHAAZE00000004mRNA7053316170537237-
GWHAAZE00000004exon7053316170533310-
GWHAAZE00000004exon7053359770533677-
GWHAAZE00000004exon7053580270535948-
GWHAAZE00000004exon7053604670536145-
GWHAAZE00000004exon7053705370537091-
GWHAAZE00000004exon7053718570537237-
GWHAAZE00000004CDS7053718570537237-
GWHAAZE00000004CDS7053705370537091-
GWHAAZE00000004CDS7053604670536145-
GWHAAZE00000004CDS7053580270535948-
GWHAAZE00000004CDS7053359770533677-
GWHAAZE00000004CDS7053316170533310-
Transcript Sequence

Network for GWHGAAZE016161

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras101807.10E-53
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07897RAB7A Endocytosis map04144
Phagosomemap04145
Autophagy - animalmap04140
Autophagy - yeastmap04138
Mitophagy - animalmap04137

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.298
SRR3591706second leaf6.652
SRR3591707mature leaf3.745
SRR3591708Shoot apex26.187
SRR3591709Stem22.292
SRR3591710White floral bud61.384
SRR3591711White flower16.146
SRR3591712Green floral bud77.227
SRR3591713Yellow flower19.967
SRP173429 SRR8316895Juvenile bud stage 20.909
SRR8316896Juvenile bud stage 41.942
SRR8316897Juvenile bud stage 24.154
SRR8316894Third green stage 14.553
SRR8316900Third green stage 78.645
SRR8316901Third green stage 77.700
SRR8316898Complete white stage 16.357
SRR8316899Complete white stage 30.855
SRR8316903Complete white stage 15.610
SRR8316902Silver flowering stage11.077
SRR8316904Silver flowering stage15.133
SRR8316905Silver flowering stage9.005
SRR8316906Gold flowering stage 35.131
SRR8316907Gold flowering stage 26.027
SRR8316908Gold flowering stage 30.359
SRP132670SRR6706286Control48.485
SRR6706287Light intensity 50%48.493
SRR6706288Light intensity 20%48.917
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.560
CNS0095593Slightly white alabastrum(diploid) 248.953
CNS0095594Slightly white alabastrum(diploid) 357.565
CNS0095595Whole white alabastrum(diploid) 287.038
CNS0095596Whole white alabastrum(diploid) 3118.672
CNS0095597Whole white alabastrum(diploid) 4110.752
CNS0095598Silvery flower (diploied) 113.417
CNS0095599Silvery flower (diploied) 218.304
CNS0095600Silvery flower (diploied) 320.315
CNS0095601Golden flower (diploid) 114.418
CNS0095602Golden flower (diploid) 214.518
CNS0095603Golden flower (diploid) 317.252
CNS0095604Slightly white alabastrum(tetraploid) 1100.259
CNS0095605Slightly white alabastrum(tetraploid) 288.576
CNS0095606Slightly white alabastrum(tetraploid) 320.399
CNS0095607Whole white alabastrum(tetraploid) 1127.730
CNS0095608Whole white alabastrum(tetraploid) 2145.831
CNS0095609Whole white alabastrum(tetraploid) 3100.300
CNS0095610Silvery flower (tetraploid) 119.245
CNS0095611Silvery flower (tetraploid) 221.345
CNS0095612Silvery flower (tetraploid) 332.907
CNS0095613Golden flower (tetraploid) 118.571
CNS0095614Golden flower (tetraploid) 220.390
CNS0095615Golden flower (tetraploid) 316.752
CRA001975CRR073297Stem 116.821
CRR073298Stem 216.656
CRR073299Stem 311.630
CRR073300Leaf 136.072
CRR073301Leaf 218.795
CRR073302Leaf 322.721
CRR073303Juvenile bud 130.113
CRR073304Juvenile bud 225.028
CRR073305Juvenile bud 39.795
CRR073306Third green 110.963
CRR073307Third green 28.222
CRR073308Third green 39.872
CRR073309Second white 111.171
CRR073310Second white 211.387
CRR073311Second white 37.697
CRR073312Silver flowering 111.504
CRR073313Silver flowering 213.689
CRR073314Silver flowering 311.014
CRR073315Gold flowering 111.644
CRR073316Gold flowering 25.661
CRR073317Gold flowering 37.124
CRR073318Tawny withering 112.090
CRR073319Tawny withering 212.255
CRR073320Tawny withering 319.913