Gene detail

Detail information of GWHGAAZE016165

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010243330.1	6.9756E-174	PREDICTED: sphinganine C(4)-monooxygenase 1-like [Nelumbo nucifera]
Swissprot	tr\|Q9AST3\|SBH2_ARATH	4E-128	Sphinganine C(4)-monooxygenase 2
trEMBL	tr\|V4TDR4\|V4TDR4_9ROSI	1E-169	Uncharacterized protein {ECO:0000313\|EMBL:ESR47806.1}
TAIR10	AT1G69640.1	2E-94	sphingoid base hydroxylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	70593167	70601435	-
GWHAAZE00000004	mRNA	70593167	70601435	-
GWHAAZE00000004	exon	70601205	70601435	-
GWHAAZE00000004	exon	70593167	70593709	-
GWHAAZE00000004	CDS	70601205	70601435	-
GWHAAZE00000004	CDS	70593167	70593709	-

Transcript Sequence
>GWHTAAZE016185 ATGGTGTTTTGGGAAGGGTATGTAAGTGATGAAGCGATGGGTACATTTGCCCCAATCATAGTGTATTGGTTATATGCGGGTTTTTATCAGATTTTGCCACCTTTAGACAACTATAGGCTGCATACTAGAAAGGAAGAGGATGAGAAGAATTCGGTGCCTTTGTCGGCGGTTGTTAGAGGTGTTTTGCTTCAACAGCTTGTTCAGGCTACCGTTGCTCAGGCTCTATTTGTGTTGACCTCTAAACCAAATTCATCCGGGATCACATCTCAGCCGTCCCTCTACATCCAATTAATACAAATTATTGTCGCGATGGTGGTCATGGACACATGGCAGTACTTTGTGCATCGATACATGCACCAAAACAAATTCTTGTACCGCCATATCCACTCCCAACACCATAGATTGGTTGTGCCTTACGCAATTGGGGCCCTCTACAACCACCCACTTGAGGGTCTCCTCTTGGACACATTTGGTGGGGCCATCTCTTTCCTCGTATCGGGCATGACTGCACGGACGGCTGTGATCTTCTTCTGCTTCGCCGTGATCAAAACCGTGGACGATCATTGCGGACTATGGTTGCCCGGTAATATCTTCCACTTATTGTTTCAAAACAATACTGCTTACCATGATATTCACCATCAACTCCACGGCACAAAGTACAACTACTCGCAGCCTTTCTTTCCTATTTGGGACAAGATTCTGGGGACCCACATGCCGTACAGTCTTGTAAAGAGGTCCGAAGGAGGGTTTGAAGCGAGGCCAATGAAAGACTAA

Network for GWHGAAZE016165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	101	236	2.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04713	SUR2	Metabolic pathways	map01100
K04713	SUR2	Sphingolipid metabolism	map00600

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.325
	SRR3591706	second leaf	15.996
	SRR3591707	mature leaf	6.979
	SRR3591708	Shoot apex	32.184
	SRR3591709	Stem	21.938
	SRR3591710	White floral bud	14.927
	SRR3591711	White flower	13.418
	SRR3591712	Green floral bud	28.921
	SRR3591713	Yellow flower	5.800
SRP173429	SRR8316895	Juvenile bud stage	11.236
	SRR8316896	Juvenile bud stage	12.227
	SRR8316897	Juvenile bud stage	5.453
	SRR8316894	Third green stage	5.073
	SRR8316900	Third green stage	11.831
	SRR8316901	Third green stage	12.247
	SRR8316898	Complete white stage	4.919
	SRR8316899	Complete white stage	18.196
	SRR8316903	Complete white stage	5.740
	SRR8316902	Silver flowering stage	2.120
	SRR8316904	Silver flowering stage	3.905
	SRR8316905	Silver flowering stage	2.875
	SRR8316906	Gold flowering stage	6.501
	SRR8316907	Gold flowering stage	5.670
	SRR8316908	Gold flowering stage	7.339
SRP132670	SRR6706286	Control	10.016
	SRR6706287	Light intensity 50%	9.777
	SRR6706288	Light intensity 20%	10.753
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.614
	CNS0095593	Slightly white alabastrum(diploid) 2	11.880
	CNS0095594	Slightly white alabastrum(diploid) 3	10.181
	CNS0095595	Whole white alabastrum(diploid) 2	10.603
	CNS0095596	Whole white alabastrum(diploid) 3	8.009
	CNS0095597	Whole white alabastrum(diploid) 4	8.248
	CNS0095598	Silvery flower (diploied) 1	10.826
	CNS0095599	Silvery flower (diploied) 2	6.313
	CNS0095600	Silvery flower (diploied) 3	7.627
	CNS0095601	Golden flower (diploid) 1	5.253
	CNS0095602	Golden flower (diploid) 2	7.669
	CNS0095603	Golden flower (diploid) 3	7.591
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.705
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.702
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.539
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.492
	CNS0095610	Silvery flower (tetraploid) 1	9.694
	CNS0095611	Silvery flower (tetraploid) 2	10.086
	CNS0095612	Silvery flower (tetraploid) 3	7.846
	CNS0095613	Golden flower (tetraploid) 1	6.500
	CNS0095614	Golden flower (tetraploid) 2	9.347
	CNS0095615	Golden flower (tetraploid) 3	6.361
CRA001975	CRR073297	Stem 1	17.355
	CRR073298	Stem 2	14.199
	CRR073299	Stem 3	22.487
	CRR073300	Leaf 1	16.993
	CRR073301	Leaf 2	15.727
	CRR073302	Leaf 3	16.820
	CRR073303	Juvenile bud 1	20.887
	CRR073304	Juvenile bud 2	21.998
	CRR073305	Juvenile bud 3	13.659
	CRR073306	Third green 1	9.463
	CRR073307	Third green 2	10.489
	CRR073308	Third green 3	9.005
	CRR073309	Second white 1	5.641
	CRR073310	Second white 2	5.381
	CRR073311	Second white 3	3.825
	CRR073312	Silver flowering 1	3.800
	CRR073313	Silver flowering 2	2.522
	CRR073314	Silver flowering 3	3.622
	CRR073315	Gold flowering 1	9.747
	CRR073316	Gold flowering 2	7.437
	CRR073317	Gold flowering 3	7.966
	CRR073318	Tawny withering 1	31.305
	CRR073319	Tawny withering 2	23.777
	CRR073320	Tawny withering 3	33.821