Detail information of GWHGAAZE016169


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006361460.12.3052E-149PREDICTED: protein YIPF5 homolog [Solanum tuberosum]
trEMBLtr|M1BPW2|M1BPW2_SOLTU9E-150Protein YIPF {ECO:0000256|RuleBase:RU361264}
TAIR10AT3G52760.12E-75Integral membrane Yip1 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7063984770640605+
GWHAAZE00000004mRNA7063984770640605+
GWHAAZE00000004exon7063984770640605+
GWHAAZE00000004CDS7063984770640605+
Transcript Sequence

Network for GWHGAAZE016169

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0076


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04893.18Yip11262491.30E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016020cellular_componentmembrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.773
SRR3591706second leaf11.167
SRR3591707mature leaf18.406
SRR3591708Shoot apex15.401
SRR3591709Stem24.549
SRR3591710White floral bud27.939
SRR3591711White flower32.603
SRR3591712Green floral bud32.200
SRR3591713Yellow flower28.463
SRP173429 SRR8316895Juvenile bud stage 14.719
SRR8316896Juvenile bud stage 18.948
SRR8316897Juvenile bud stage 8.427
SRR8316894Third green stage 6.702
SRR8316900Third green stage 29.441
SRR8316901Third green stage 30.545
SRR8316898Complete white stage 12.377
SRR8316899Complete white stage 34.672
SRR8316903Complete white stage 21.598
SRR8316902Silver flowering stage12.695
SRR8316904Silver flowering stage22.026
SRR8316905Silver flowering stage9.646
SRR8316906Gold flowering stage 27.802
SRR8316907Gold flowering stage 23.922
SRR8316908Gold flowering stage 31.544
SRP132670SRR6706286Control19.612
SRR6706287Light intensity 50%19.650
SRR6706288Light intensity 20%22.933
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.660
CNS0095593Slightly white alabastrum(diploid) 222.003
CNS0095594Slightly white alabastrum(diploid) 317.877
CNS0095595Whole white alabastrum(diploid) 222.322
CNS0095596Whole white alabastrum(diploid) 320.862
CNS0095597Whole white alabastrum(diploid) 423.261
CNS0095598Silvery flower (diploied) 118.355
CNS0095599Silvery flower (diploied) 217.192
CNS0095600Silvery flower (diploied) 331.643
CNS0095601Golden flower (diploid) 115.161
CNS0095602Golden flower (diploid) 229.045
CNS0095603Golden flower (diploid) 326.334
CNS0095604Slightly white alabastrum(tetraploid) 122.505
CNS0095605Slightly white alabastrum(tetraploid) 220.366
CNS0095606Slightly white alabastrum(tetraploid) 329.887
CNS0095607Whole white alabastrum(tetraploid) 117.830
CNS0095608Whole white alabastrum(tetraploid) 217.539
CNS0095609Whole white alabastrum(tetraploid) 324.132
CNS0095610Silvery flower (tetraploid) 123.474
CNS0095611Silvery flower (tetraploid) 222.874
CNS0095612Silvery flower (tetraploid) 328.332
CNS0095613Golden flower (tetraploid) 120.815
CNS0095614Golden flower (tetraploid) 228.385
CNS0095615Golden flower (tetraploid) 336.740
CRA001975CRR073297Stem 119.679
CRR073298Stem 223.426
CRR073299Stem 325.886
CRR073300Leaf 127.499
CRR073301Leaf 231.188
CRR073302Leaf 331.804
CRR073303Juvenile bud 135.430
CRR073304Juvenile bud 237.621
CRR073305Juvenile bud 336.960
CRR073306Third green 130.480
CRR073307Third green 228.259
CRR073308Third green 327.483
CRR073309Second white 138.342
CRR073310Second white 228.097
CRR073311Second white 328.566
CRR073312Silver flowering 135.191
CRR073313Silver flowering 239.638
CRR073314Silver flowering 334.251
CRR073315Gold flowering 116.702
CRR073316Gold flowering 217.437
CRR073317Gold flowering 318.252
CRR073318Tawny withering 130.475
CRR073319Tawny withering 228.069
CRR073320Tawny withering 327.182