Detail information of GWHGAAZE016184


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW71296.11.42098E-71hypothetical protein EUGRSUZ_F04382 [Eucalyptus grandis]
Swissprottr|Q8GXR5|PPCS1_ARATH7E-55Phosphopantothenate--cysteine ligase 1
trEMBLtr|A0A059BZ99|A0A059BZ99_EUCGR5E-72Uncharacterized protein {ECO:0000313|EMBL:KCW71296.1}
TAIR10AT1G12350.12E-394-phospho-panto-thenoylcysteine synthetase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7107314171075191+
GWHAAZE00000004mRNA7107314171075191+
GWHAAZE00000004exon7107314171073160+
GWHAAZE00000004exon7107334371073415+
GWHAAZE00000004exon7107408471074203+
GWHAAZE00000004exon7107494371075191+
GWHAAZE00000004CDS7107314171073160+
GWHAAZE00000004CDS7107334371073415+
GWHAAZE00000004CDS7107408471074203+
GWHAAZE00000004CDS7107494371075191+
Transcript Sequence

Network for GWHGAAZE016184

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04127.16DFP131043.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01922PPCS, COAB Metabolic pathways map01100
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf55.041
SRR3591706second leaf35.127
SRR3591707mature leaf30.208
SRR3591708Shoot apex62.574
SRR3591709Stem67.650
SRR3591710White floral bud47.892
SRR3591711White flower56.056
SRR3591712Green floral bud52.925
SRR3591713Yellow flower55.378
SRP173429 SRR8316895Juvenile bud stage 38.020
SRR8316896Juvenile bud stage 51.733
SRR8316897Juvenile bud stage 22.569
SRR8316894Third green stage 18.596
SRR8316900Third green stage 48.651
SRR8316901Third green stage 47.795
SRR8316898Complete white stage 20.750
SRR8316899Complete white stage 82.576
SRR8316903Complete white stage 28.285
SRR8316902Silver flowering stage19.890
SRR8316904Silver flowering stage27.421
SRR8316905Silver flowering stage12.592
SRR8316906Gold flowering stage 54.258
SRR8316907Gold flowering stage 50.553
SRR8316908Gold flowering stage 63.635
SRP132670SRR6706286Control41.201
SRR6706287Light intensity 50%44.033
SRR6706288Light intensity 20%46.145
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.918
CNS0095593Slightly white alabastrum(diploid) 251.571
CNS0095594Slightly white alabastrum(diploid) 346.311
CNS0095595Whole white alabastrum(diploid) 234.983
CNS0095596Whole white alabastrum(diploid) 331.346
CNS0095597Whole white alabastrum(diploid) 432.921
CNS0095598Silvery flower (diploied) 159.029
CNS0095599Silvery flower (diploied) 244.655
CNS0095600Silvery flower (diploied) 341.649
CNS0095601Golden flower (diploid) 149.252
CNS0095602Golden flower (diploid) 238.896
CNS0095603Golden flower (diploid) 337.239
CNS0095604Slightly white alabastrum(tetraploid) 142.916
CNS0095605Slightly white alabastrum(tetraploid) 237.326
CNS0095606Slightly white alabastrum(tetraploid) 358.471
CNS0095607Whole white alabastrum(tetraploid) 126.276
CNS0095608Whole white alabastrum(tetraploid) 223.518
CNS0095609Whole white alabastrum(tetraploid) 339.213
CNS0095610Silvery flower (tetraploid) 150.206
CNS0095611Silvery flower (tetraploid) 249.214
CNS0095612Silvery flower (tetraploid) 348.251
CNS0095613Golden flower (tetraploid) 147.279
CNS0095614Golden flower (tetraploid) 249.631
CNS0095615Golden flower (tetraploid) 330.972
CRA001975CRR073297Stem 145.966
CRR073298Stem 238.119
CRR073299Stem 343.025
CRR073300Leaf 144.249
CRR073301Leaf 244.751
CRR073302Leaf 340.907
CRR073303Juvenile bud 141.382
CRR073304Juvenile bud 229.537
CRR073305Juvenile bud 333.498
CRR073306Third green 110.486
CRR073307Third green 212.656
CRR073308Third green 315.913
CRR073309Second white 19.560
CRR073310Second white 212.405
CRR073311Second white 314.083
CRR073312Silver flowering 16.352
CRR073313Silver flowering 25.697
CRR073314Silver flowering 38.567
CRR073315Gold flowering 124.441
CRR073316Gold flowering 227.389
CRR073317Gold flowering 317.664
CRR073318Tawny withering 138.233
CRR073319Tawny withering 242.099
CRR073320Tawny withering 348.856