Gene detail

Detail information of GWHGAAZE016185

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285820.1	5.0129E-173	PREDICTED: transcription factor TGA4 [Vitis vinifera]
Swissprot	tr\|Q93ZE2\|TGA7_ARATH	9E-139	Transcription factor TGA7
trEMBL	tr\|F6H0P0\|F6H0P0_VITVI	3E-173	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45537.1}
TAIR10	AT1G77920.1	1E-105	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71076042	71079312	-
GWHAAZE00000004	mRNA	71076042	71079312	-
GWHAAZE00000004	exon	71076042	71076191	-
GWHAAZE00000004	exon	71076797	71077024	-
GWHAAZE00000004	exon	71078083	71078354	-
GWHAAZE00000004	exon	71078429	71078483	-
GWHAAZE00000004	exon	71078557	71078721	-
GWHAAZE00000004	exon	71078816	71078875	-
GWHAAZE00000004	exon	71079127	71079312	-
GWHAAZE00000004	CDS	71079127	71079312	-
GWHAAZE00000004	CDS	71078816	71078875	-
GWHAAZE00000004	CDS	71078557	71078721	-
GWHAAZE00000004	CDS	71078429	71078483	-
GWHAAZE00000004	CDS	71078083	71078354	-
GWHAAZE00000004	CDS	71076797	71077024	-
GWHAAZE00000004	CDS	71076042	71076191	-

Transcript Sequence
>GWHTAAZE016205 ATGGCTTCTACATCAACTCAATTTGCCACCTCAAGAAGGATGGGTATATATGATCCAATCCACCAGATTAGCATGTGGGACGACGCGTTTGTGGGCGATATTAGCCCAAATACGGGCATTTCCACAATTTTACAGGTTGATCCCATGCTAGACAATAAGGTGAGAAAGAATGAATTGCCTCATTCGTCGCAAAGACGGTTAGCACAAAACCGTGAAGCTGCCCGTAAAAGTCGTATGAGAAAAAAGGTTTATGTTCAACAGTTGGAAACAAGCCGTTTAAAGTTAGCGCAATTAGAACAGGAGCTTGAGAGAGCTAGACATCAGGTGAGACCTCGTTTGGATACTATTCATTCTCTTAAGGGTGGCTCTATTTCAAAGCAGATATGGCTTATACAGTTTTACCAAAGCCAAGGTGTGTACACTGGGGGTGCATTAAATACAGGATTCTCTGGAAATGTAAATCCAGGGATTGTGACATTTGAGATGGAATATGCACTATGGGTTGAGGAGCAACAGAAAAAGAACAATGAACTTAGAAGTGTGTTACAAACACAAATAAGCGATGTTGAGCTACATATATTTGTAGACAGCGTCTTACTTCACTATTATGAACTTTTCCGGATGAAAACCGATGCTGCAAGGGCCGATGTCTTCTATTTGATGTCCGGAATGTGGAGAACATCGGTCGAGCGCTTCTTTCTTTGGATTGGAGGGTTCCGCCCATCAGAGCTTTTAAATGTTTTAATGCCGCAACTTGAGCAATTGACCGATGAACAAGTTGTGAGGGTGTGTAACTTGCGACACTCGTGTCAGCAAGCTGAGGACGCTCTCTCGCAAGGAATGGATAAACTTCAGCAAACTCTGGCTCAAACCCTTATAATTGACCCGATGGACGCAGCAAGTTACAATGCTCAAATGGCTTCCGCAATGGAGAAGCTTGACTCGATTGAAAACTTTGTGAACGGGGCGGATCACCTTCGGCAGCAAACCCTACAGCAAATGTCAAGAATCTTGACAACCCGACAAACGGCTCGAGCCTTGCTTACATTGGGGGAATACTTTCACCGCCTTCGCACTCTCACTCAACTATGGGCGGCTCGTCCTTGTGAACAGCCC

Network for GWHGAAZE016185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0211

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	64	103	1.60E-07
PF14144.7	DOG1	176	249	1.60E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006351	biological_process	transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.794
	SRR3591706	second leaf	0.825
	SRR3591707	mature leaf	6.170
	SRR3591708	Shoot apex	1.563
	SRR3591709	Stem	13.678
	SRR3591710	White floral bud	2.697
	SRR3591711	White flower	26.446
	SRR3591712	Green floral bud	3.152
	SRR3591713	Yellow flower	54.265
SRP173429	SRR8316895	Juvenile bud stage	1.518
	SRR8316896	Juvenile bud stage	2.228
	SRR8316897	Juvenile bud stage	0.542
	SRR8316894	Third green stage	0.482
	SRR8316900	Third green stage	1.288
	SRR8316901	Third green stage	1.066
	SRR8316898	Complete white stage	0.089
	SRR8316899	Complete white stage	1.055
	SRR8316903	Complete white stage	0.791
	SRR8316902	Silver flowering stage	2.796
	SRR8316904	Silver flowering stage	4.812
	SRR8316905	Silver flowering stage	2.425
	SRR8316906	Gold flowering stage	18.620
	SRR8316907	Gold flowering stage	26.848
	SRR8316908	Gold flowering stage	27.576
SRP132670	SRR6706286	Control	1.437
	SRR6706287	Light intensity 50%	1.392
	SRR6706288	Light intensity 20%	1.554
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.154
	CNS0095593	Slightly white alabastrum(diploid) 2	0.603
	CNS0095594	Slightly white alabastrum(diploid) 3	3.597
	CNS0095595	Whole white alabastrum(diploid) 2	0.448
	CNS0095596	Whole white alabastrum(diploid) 3	0.697
	CNS0095597	Whole white alabastrum(diploid) 4	0.510
	CNS0095598	Silvery flower (diploied) 1	1.471
	CNS0095599	Silvery flower (diploied) 2	2.520
	CNS0095600	Silvery flower (diploied) 3	7.696
	CNS0095601	Golden flower (diploid) 1	4.269
	CNS0095602	Golden flower (diploid) 2	15.199
	CNS0095603	Golden flower (diploid) 3	16.879
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.312
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.769
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.288
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.280
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.852
	CNS0095610	Silvery flower (tetraploid) 1	18.798
	CNS0095611	Silvery flower (tetraploid) 2	8.804
	CNS0095612	Silvery flower (tetraploid) 3	7.603
	CNS0095613	Golden flower (tetraploid) 1	8.952
	CNS0095614	Golden flower (tetraploid) 2	16.014
	CNS0095615	Golden flower (tetraploid) 3	22.597
CRA001975	CRR073297	Stem 1	1.313
	CRR073298	Stem 2	1.216
	CRR073299	Stem 3	1.688
	CRR073300	Leaf 1	0.725
	CRR073301	Leaf 2	0.888
	CRR073302	Leaf 3	0.541
	CRR073303	Juvenile bud 1	0.297
	CRR073304	Juvenile bud 2	0.116
	CRR073305	Juvenile bud 3	0.104
	CRR073306	Third green 1	0.468
	CRR073307	Third green 2	0.530
	CRR073308	Third green 3	0.528
	CRR073309	Second white 1	4.960
	CRR073310	Second white 2	6.640
	CRR073311	Second white 3	5.224
	CRR073312	Silver flowering 1	6.694
	CRR073313	Silver flowering 2	5.917
	CRR073314	Silver flowering 3	8.601
	CRR073315	Gold flowering 1	3.396
	CRR073316	Gold flowering 2	2.693
	CRR073317	Gold flowering 3	2.213
	CRR073318	Tawny withering 1	10.722
	CRR073319	Tawny withering 2	10.753
	CRR073320	Tawny withering 3	12.279