Gene detail

Detail information of GWHGAAZE016187

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008233972.1	0	PREDICTED: aminotransferase ALD1-like isoform X2 [Prunus mume]
Swissprot	tr\|Q9ZQI7\|ALD1_ARATH	0	Aminotransferase ALD1
trEMBL	tr\|V4T2E4\|V4T2E4_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR47302.1}
TAIR10	AT2G13810.1	7E-162	AGD2-like defense response protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71115824	71123770	+
GWHAAZE00000004	mRNA	71115824	71123770	+
GWHAAZE00000004	exon	71115824	71115860	+
GWHAAZE00000004	exon	71116004	71116071	+
GWHAAZE00000004	exon	71116847	71116963	+
GWHAAZE00000004	exon	71117456	71117518	+
GWHAAZE00000004	exon	71117824	71117928	+
GWHAAZE00000004	exon	71118098	71118148	+
GWHAAZE00000004	exon	71119070	71119390	+
GWHAAZE00000004	exon	71122470	71122676	+
GWHAAZE00000004	exon	71123471	71123770	+
GWHAAZE00000004	CDS	71115824	71115860	+
GWHAAZE00000004	CDS	71116004	71116071	+
GWHAAZE00000004	CDS	71116847	71116963	+
GWHAAZE00000004	CDS	71117456	71117518	+
GWHAAZE00000004	CDS	71117824	71117928	+
GWHAAZE00000004	CDS	71118098	71118148	+
GWHAAZE00000004	CDS	71119070	71119390	+
GWHAAZE00000004	CDS	71122470	71122676	+
GWHAAZE00000004	CDS	71123471	71123770	+

Transcript Sequence
>GWHTAAZE016207 CTTCTTACACTTCAAAATCTCTCAATGGGACGAGTTGGTCGTTGCACTAGTGTCTGCCGTAATGTCAATATGAAGAACCTGCAGAATGAATACTTGTTTCCTGAGATAAGCTTACGTGAGTTTGAGCACAATCAAAAATACCCAGATGCAGAGTTGATAAGACTTGGAATTGGTGACACTACCGAACCTATACCAGATATCATAACTTCAGCTATGGTTGAGCATGCACGTGCTCTATCAACTGTTAAAGGTTATAGAGGGTATGGAGCTGAGCAAGGGAACAAGGAACTGAGACAGGCAATCGCTAACAGATTCTATGGAGACATGGGTGTTAAATATGATGAGATTTTTGTATCAGATGGTGCACAAAGCGACATATCTCGTCTTCAGATGCTTTTGGGATCCAATGTGAGGATAGCTGTGCAAGACCCGTCCTTTCCGGCATATATCGATACAGCTGTTATTATTGGTCAGGCCGGGAGATTCCAAGAGGAAATCGGAAAATATAGAAACATTGTCTACATGAACTGTCGACCGGAAAATAACTTCTTCCCCGACTTATCTACTATTCTAAGGACTGATATTATTTTTTTCTGCTCACCAAACAACCCAACGGGCAACGCTGCATCATGGCTACAACTAAAGCATTTAGTGGAGTTTGCAAAGGAAAATGGATCTATTATAGTTTATGATTCTGCATATGCTTCTTATATCACTGATGGAAGCCCAAAATCAATCTTTGAAATTCCAGGTGCAAGAGAGGTTGCTATTGAAGTTTCGTCTTTCTCAAAGTTTGCCGGTTTCACTGGGGTCCGCCTCGGTTGGACCGTCGTTCCCAAAGAGCTATTATATTCAAATGGATATCCTATCATAAAGGATTATAATCGTCTCGTTTGCACGACTTTCAATGGTGCTTCTAGTATTGCTCAGGCTGGAGGGTTGGCGTGCCTTTCTTCAGAGGGTTACTCGGCTTTGAATGCTGTGATCAACTACTACAACCACAATGCCAAAATCATCCGGGATGTGTTTTCGTCGCTTGGATTGAAGGTATATGGTGGGGAAAATGCACCATACATATGGGTTCATTTTCCGGGAATGAGATCATGGGATGTATTTGCTGAGATTCTTAACAAAGCACACATAGTAACAGTTCCAGGTATTGGATTTGGACCTGGAGGTGAAGAGTTTATTAGGGTTAGCGCTTTTGCACATAGATCATGTATTTTAGAGGCCTCAAGGAGGCTTAAAAATAACTTTTTATTCAATTAA

Network for GWHGAAZE016187

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	52	404	1.80E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10206	E2.6.1.83	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Lysine biosynthesis	map00300

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0008483	molecular_function	transaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.064
	SRR3591711	White flower	0.302
	SRR3591712	Green floral bud	0.085
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.592
	SRR8316896	Juvenile bud stage	0.903
	SRR8316897	Juvenile bud stage	0.235
	SRR8316894	Third green stage	0.053
	SRR8316900	Third green stage	0.088
	SRR8316901	Third green stage	0.121
	SRR8316898	Complete white stage	0.104
	SRR8316899	Complete white stage	0.055
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.021
	SRR8316905	Silver flowering stage	0.005
	SRR8316906	Gold flowering stage	0.098
	SRR8316907	Gold flowering stage	0.069
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.102
	SRR6706287	Light intensity 50%	0.245
	SRR6706288	Light intensity 20%	0.260
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.619
	CNS0095593	Slightly white alabastrum(diploid) 2	0.071
	CNS0095594	Slightly white alabastrum(diploid) 3	0.498
	CNS0095595	Whole white alabastrum(diploid) 2	0.055
	CNS0095596	Whole white alabastrum(diploid) 3	0.113
	CNS0095597	Whole white alabastrum(diploid) 4	0.259
	CNS0095598	Silvery flower (diploied) 1	0.329
	CNS0095599	Silvery flower (diploied) 2	0.280
	CNS0095600	Silvery flower (diploied) 3	0.122
	CNS0095601	Golden flower (diploid) 1	0.101
	CNS0095602	Golden flower (diploid) 2	0.058
	CNS0095603	Golden flower (diploid) 3	0.115
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.563
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.168
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.670
	CNS0095610	Silvery flower (tetraploid) 1	0.173
	CNS0095611	Silvery flower (tetraploid) 2	0.110
	CNS0095612	Silvery flower (tetraploid) 3	0.235
	CNS0095613	Golden flower (tetraploid) 1	0.198
	CNS0095614	Golden flower (tetraploid) 2	0.079
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.135
	CRR073298	Stem 2	0.050
	CRR073299	Stem 3	0.076
	CRR073300	Leaf 1	0.198
	CRR073301	Leaf 2	0.036
	CRR073302	Leaf 3	0.130
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.142
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.123
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.247
	CRR073316	Gold flowering 2	0.314
	CRR073317	Gold flowering 3	0.236
	CRR073318	Tawny withering 1	0.085
	CRR073319	Tawny withering 2	1.041
	CRR073320	Tawny withering 3	0.031