Gene detail

Detail information of GWHGAAZE016189

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010916556.1	PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Elaeis guineensis]
Swissprot	tr\|P35614\|ERF1Z_ARATH	Eukaryotic peptide chain release factor subunit 1-3
trEMBL	tr\|I1L3W8\|I1L3W8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G29600.1}
TAIR10	AT3G26618.1	eukaryotic release factor 1-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71163959	71165272	-
GWHAAZE00000004	mRNA	71163959	71165272	-
GWHAAZE00000004	exon	71163959	71165272	-
GWHAAZE00000004	CDS	71163959	71165272	-

Transcript Sequence
>GWHTAAZE016209 ATGGCAGATGCTCATGAAACTGATAAGAACATTGAGATATGGAAGATCAAGAAGCTTATCAAGGCACTCGAAGCTGCTAGAGGCAATGGCACCAGCATGATCTCTCTTATTATGCCTCCACGTGATCAAATATCTCGAGTCACAAAGATGCTTGGAGATGAATTTGGAACTGCATCAAACATTAAAAGCAGGGTCAATCGACAGTCAGTTCTTGGAGCCATCACATCTGCTCAACAGAGGCTTAAACTCTACAGTAAGGTCCCTCCAAATGGACTTGTCCTCTACACTGGAACCATTGTAACTGATGATGGTAAGGAAAAGAAGGTGACGATTGATTTTGAACCCTTCAGGCCCATAAACGCGTCTCTTTATCTCTGTGACAACAAGTTCCACACCGAAGCCCTAAATGAACTCTTGGAATCTGATGATAAGTTTGGTTTTATCGTTATGGATGGTAATGGGACCCTCTTTGGGACATTGAGTGGCAACACAAGAGAAGTGCTCCACAAGTTTTCTGTTGATCTCCCAAAGAAACACGGCAGAGGAGGGCAGTCAGCTCTTCGTTTTGCGCGTCTTCGAATGGAGAAGCGCCACAACTATGTGAGGAAAACAGCTGAGCTGGCAACACAGTTTTACATTAACCCTGCCACCAGTCAACCTAATGTTGCTGGGCTAATACTTGCAGGTTCTGCTGACTTCAAGACCGAGCTGAGCCAGTCTGATATGTTTGACCCTCGTCTTCAAGCAAAGATTCTCAATGTCGTCGATGTTTCTTATGGAGGGGAAAACGGGTTCAATCAAGCGATCGAGCTGTCCTCGGAAATTCTTTCAAATGTGAAGTTTATTCAAGAGAAGCGCTTGATCGGGAAGTACTTTGAGGAGATAAGTCAAGATACTGGGAAGTACGTTTTTGGGGTTGATGACACTCTGAAAGCTTTAGAGATGGGTGCAGTTGAAACCCTAATTGTGTGGGAAAATCTGGACATGAATCGATACGTGCTTAAACATAGCGTCACGGGTGAACTTATCATAAAGCACTTTAACAAGGAGCAAGAGGCTGATCAGAGTAACTTCCGGGACCCAGCCACAAATGCTGACCTGGAAGTTCAAGAAAAGTTGTCGCTACTCGAATGGTTCGCAAACGAGTACAGGCGGTTCGGGTGCACCCTTGAGTTTGTGACCAACAAATCACAAGAGGGTTCTCAATTTTGCAGGGGGTTCGGTGGGATTGGGGGAATTCTTCGATACCAGCTTGATATTCGATCGTTTGATGAGCTTTCTGATGATGGGGAAACTTTTGAAGATTCTGATTAG

Network for GWHGAAZE016189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0129

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03463.16	eRF1_1	17	138	1.50E-19
PF03464.16	eRF1_2	144	277	1.20E-41
PF03465.16	eRF1_3	281	418	9.80E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03265	ETF1, ERF1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0006415	biological_process	translational termination
GO:0005737	cellular_component	cytoplasm
GO:0003747	molecular_function	translation release factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	127.107
	SRR3591706	second leaf	79.010
	SRR3591707	mature leaf	68.049
	SRR3591708	Shoot apex	84.967
	SRR3591709	Stem	89.754
	SRR3591710	White floral bud	116.519
	SRR3591711	White flower	118.529
	SRR3591712	Green floral bud	119.729
	SRR3591713	Yellow flower	83.789
SRP173429	SRR8316895	Juvenile bud stage	47.995
	SRR8316896	Juvenile bud stage	62.759
	SRR8316897	Juvenile bud stage	27.425
	SRR8316894	Third green stage	30.357
	SRR8316900	Third green stage	91.013
	SRR8316901	Third green stage	81.264
	SRR8316898	Complete white stage	59.446
	SRR8316899	Complete white stage	137.418
	SRR8316903	Complete white stage	90.010
	SRR8316902	Silver flowering stage	53.213
	SRR8316904	Silver flowering stage	66.755
	SRR8316905	Silver flowering stage	30.251
	SRR8316906	Gold flowering stage	83.135
	SRR8316907	Gold flowering stage	83.181
	SRR8316908	Gold flowering stage	90.139
SRP132670	SRR6706286	Control	106.839
	SRR6706287	Light intensity 50%	122.147
	SRR6706288	Light intensity 20%	131.579
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.287
	CNS0095593	Slightly white alabastrum(diploid) 2	50.904
	CNS0095594	Slightly white alabastrum(diploid) 3	39.972
	CNS0095595	Whole white alabastrum(diploid) 2	51.330
	CNS0095596	Whole white alabastrum(diploid) 3	47.030
	CNS0095597	Whole white alabastrum(diploid) 4	35.589
	CNS0095598	Silvery flower (diploied) 1	40.716
	CNS0095599	Silvery flower (diploied) 2	36.492
	CNS0095600	Silvery flower (diploied) 3	92.808
	CNS0095601	Golden flower (diploid) 1	27.968
	CNS0095602	Golden flower (diploid) 2	67.186
	CNS0095603	Golden flower (diploid) 3	62.464
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.726
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.757
	CNS0095606	Slightly white alabastrum(tetraploid) 3	105.327
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.748
	CNS0095610	Silvery flower (tetraploid) 1	86.661
	CNS0095611	Silvery flower (tetraploid) 2	75.514
	CNS0095612	Silvery flower (tetraploid) 3	59.764
	CNS0095613	Golden flower (tetraploid) 1	34.554
	CNS0095614	Golden flower (tetraploid) 2	62.089
	CNS0095615	Golden flower (tetraploid) 3	91.004
CRA001975	CRR073297	Stem 1	121.664
	CRR073298	Stem 2	104.969
	CRR073299	Stem 3	130.116
	CRR073300	Leaf 1	133.578
	CRR073301	Leaf 2	122.620
	CRR073302	Leaf 3	137.151
	CRR073303	Juvenile bud 1	151.990
	CRR073304	Juvenile bud 2	144.228
	CRR073305	Juvenile bud 3	180.151
	CRR073306	Third green 1	94.378
	CRR073307	Third green 2	98.455
	CRR073308	Third green 3	105.171
	CRR073309	Second white 1	111.379
	CRR073310	Second white 2	84.011
	CRR073311	Second white 3	86.271
	CRR073312	Silver flowering 1	95.592
	CRR073313	Silver flowering 2	116.073
	CRR073314	Silver flowering 3	91.391
	CRR073315	Gold flowering 1	96.643
	CRR073316	Gold flowering 2	123.938
	CRR073317	Gold flowering 3	106.099
	CRR073318	Tawny withering 1	107.108
	CRR073319	Tawny withering 2	91.888
	CRR073320	Tawny withering 3	119.660