Detail information of GWHGAAZE016190


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP35202.13.43472E-72hypothetical protein JCGZ_09361 [Jatropha curcas]
Swissprottr|O49884|RL30_LUPLU8E-7360S ribosomal protein L30
trEMBLtr|A0A067KGI4|A0A067KGI4_JATCU1E-72Uncharacterized protein {ECO:0000313|EMBL:KDP35202.1}
TAIR10AT1G36240.17E-55Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7126498371267943-
GWHAAZE00000004mRNA7126498371267943-
GWHAAZE00000004exon7126792371267943-
GWHAAZE00000004exon7126770571267810-
GWHAAZE00000004exon7126701071267111-
GWHAAZE00000004exon7126541471265482-
GWHAAZE00000004exon7126498371265315-
GWHAAZE00000004CDS7126792371267943-
GWHAAZE00000004CDS7126770571267810-
GWHAAZE00000004CDS7126701071267111-
GWHAAZE00000004CDS7126541471265482-
GWHAAZE00000004CDS7126527571265315-
GWHAAZE00000004three_prime_UTR7126498371265274-
Transcript Sequence

Network for GWHGAAZE016190

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.27Ribosomal_L7Ae131053.60E-23
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02908RP-L30e, RPL30 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0022625cellular_componentcytosolic large ribosomal subunit
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE016190.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf111.242
SRR3591706second leaf32.235
SRR3591707mature leaf13.587
SRR3591708Shoot apex107.736
SRR3591709Stem38.143
SRR3591710White floral bud47.577
SRR3591711White flower45.784
SRR3591712Green floral bud79.193
SRR3591713Yellow flower33.164
SRP173429 SRR8316895Juvenile bud stage 63.151
SRR8316896Juvenile bud stage 90.997
SRR8316897Juvenile bud stage 62.487
SRR8316894Third green stage 37.422
SRR8316900Third green stage 115.507
SRR8316901Third green stage 104.115
SRR8316898Complete white stage 25.006
SRR8316899Complete white stage 72.520
SRR8316903Complete white stage 31.205
SRR8316902Silver flowering stage28.615
SRR8316904Silver flowering stage37.362
SRR8316905Silver flowering stage18.079
SRR8316906Gold flowering stage 42.089
SRR8316907Gold flowering stage 55.349
SRR8316908Gold flowering stage 67.352
SRP132670SRR6706286Control51.086
SRR6706287Light intensity 50%51.686
SRR6706288Light intensity 20%56.863
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1127.160
CNS0095593Slightly white alabastrum(diploid) 2134.374
CNS0095594Slightly white alabastrum(diploid) 3121.336
CNS0095595Whole white alabastrum(diploid) 2124.596
CNS0095596Whole white alabastrum(diploid) 3149.414
CNS0095597Whole white alabastrum(diploid) 4109.187
CNS0095598Silvery flower (diploied) 159.793
CNS0095599Silvery flower (diploied) 256.348
CNS0095600Silvery flower (diploied) 348.018
CNS0095601Golden flower (diploid) 149.847
CNS0095602Golden flower (diploid) 242.090
CNS0095603Golden flower (diploid) 341.973
CNS0095604Slightly white alabastrum(tetraploid) 1116.085
CNS0095605Slightly white alabastrum(tetraploid) 2112.081
CNS0095606Slightly white alabastrum(tetraploid) 3102.736
CNS0095607Whole white alabastrum(tetraploid) 1105.005
CNS0095608Whole white alabastrum(tetraploid) 294.641
CNS0095609Whole white alabastrum(tetraploid) 387.603
CNS0095610Silvery flower (tetraploid) 155.377
CNS0095611Silvery flower (tetraploid) 254.809
CNS0095612Silvery flower (tetraploid) 347.389
CNS0095613Golden flower (tetraploid) 145.070
CNS0095614Golden flower (tetraploid) 247.798
CNS0095615Golden flower (tetraploid) 328.278
CRA001975CRR073297Stem 148.184
CRR073298Stem 248.201
CRR073299Stem 344.893
CRR073300Leaf 146.593
CRR073301Leaf 245.855
CRR073302Leaf 365.653
CRR073303Juvenile bud 157.190
CRR073304Juvenile bud 234.652
CRR073305Juvenile bud 339.078
CRR073306Third green 118.563
CRR073307Third green 223.763
CRR073308Third green 314.783
CRR073309Second white 133.392
CRR073310Second white 223.807
CRR073311Second white 311.488
CRR073312Silver flowering 122.793
CRR073313Silver flowering 229.470
CRR073314Silver flowering 314.716
CRR073315Gold flowering 130.302
CRR073316Gold flowering 228.353
CRR073317Gold flowering 326.921
CRR073318Tawny withering 149.508
CRR073319Tawny withering 237.496
CRR073320Tawny withering 359.198