Gene detail

Detail information of GWHGAAZE016202

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074157.1	0	PREDICTED: phosphoglycerate mutase [Sesamum indicum]
trEMBL	tr\|A0A068TYM2\|A0A068TYM2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP01024.1}
TAIR10	AT1G22170.1	1E-143	Phosphoglycerate mutase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71554453	71559776	+
GWHAAZE00000004	mRNA	71554453	71559776	+
GWHAAZE00000004	exon	71554453	71554720	+
GWHAAZE00000004	exon	71555205	71555428	+
GWHAAZE00000004	exon	71557650	71557768	+
GWHAAZE00000004	exon	71557886	71558042	+
GWHAAZE00000004	exon	71558704	71558925	+
GWHAAZE00000004	exon	71559732	71559776	+
GWHAAZE00000004	CDS	71554453	71554720	+
GWHAAZE00000004	CDS	71555205	71555428	+
GWHAAZE00000004	CDS	71557650	71557768	+
GWHAAZE00000004	CDS	71557886	71558042	+
GWHAAZE00000004	CDS	71558704	71558925	+
GWHAAZE00000004	CDS	71559732	71559776	+

Transcript Sequence
>GWHTAAZE016222 ATGGCCGCAACTGCTTTCCACCCACCAATTGGGACACTTCAGAGTCGTGGGTATTTATATAACGAGATTAATCACGATTGTGGAAATGCTCCAGTGAAATTGATCTCAAAGGGTTTTGATGTGGATGTTAGATTGTTGAGGAGTGGAAGTTATTGCTCTAGAAAGAGGAGTTTTAGTTTAATCAAAGCGTCATCTTCTCAGACTACTGTTTTTAACCCAGTTTCAACTCCATCAAATTCTACCGCCAACGACTCCCGTAAGAAATCAAATGAAGCCGCTTTGATACTAATTAGGCACGGTGAGTCTCTATGGAATGAAAAGAATTTGTTCACAGGTTGTGTTGATGTTCCGCTGACTAAGAAGGGTGTTGAAGAGGCAATTGAAGCTGGTAAGAGAATCAGCAACATACCTGTTGACATGATTTATACTTCTGCACTCATTCGTGCGCAGATGACTGCTATGCTTGCCATGACCGAGCACCGCCGCAAGAAGGTGCCAATCATCATGCATAACGAGAGTGAACAGGCAAAGGCATGGAGTCAGATTTTCAGTGAAGAGACCAAAAAGCAGTGCATTCCAGTTGTAACGGCATGGCAACTGAATGAAAGAATGTATGGGGAACTACAGGGGCTTAACAAACAAGAAACAGCAGATAGGTATGGAAAGGAACAAGTTCACGAGTGGCGCCGTAGTTATGATACGCCTCCACCTAATGGGGAGAGCTTGGAAATGTGTGCCGAGAGAGCCGTTGCTTACTTTAAAGAACAAATTGAACCCCAACTTCAAGCTGGAAAGAATGTAATGATTGCTGCACACGGGAATTCATTGAGATCCATCATTATGTACCTTGACAAACTAACTTCCCAAGAAGTTATTAGTTTGGAACTATCAACTGGGATACCTATGCTTTACATATCCAAAGAGGGAAAGTTTATTAGGAGGGGAAGTCCTGCTGGACCTACTGAGGCAGGGGTTTATGCGTATACCAAGGGTTTGGCTCAATACAGGCAAAAGTTGGATGAAATGCTTAATTGA

Network for GWHGAAZE016202

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00300.23	His_Phos_1	94	165	1.50E-17
PF00300.23	His_Phos_1	182	296	4.80E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01834	PGAM, gpmA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0003824	molecular_function	catalytic activity
GO:0004619	molecular_function	phosphoglycerate mutase activity
GO:0016868	molecular_function	intramolecular transferase activity, phosphotransferases

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.328
	SRR3591706	second leaf	35.387
	SRR3591707	mature leaf	14.530
	SRR3591708	Shoot apex	23.118
	SRR3591709	Stem	19.832
	SRR3591710	White floral bud	36.089
	SRR3591711	White flower	42.182
	SRR3591712	Green floral bud	25.237
	SRR3591713	Yellow flower	41.155
SRP173429	SRR8316895	Juvenile bud stage	17.917
	SRR8316896	Juvenile bud stage	24.274
	SRR8316897	Juvenile bud stage	11.952
	SRR8316894	Third green stage	8.697
	SRR8316900	Third green stage	31.401
	SRR8316901	Third green stage	32.650
	SRR8316898	Complete white stage	32.785
	SRR8316899	Complete white stage	33.188
	SRR8316903	Complete white stage	44.322
	SRR8316902	Silver flowering stage	61.578
	SRR8316904	Silver flowering stage	69.898
	SRR8316905	Silver flowering stage	39.391
	SRR8316906	Gold flowering stage	176.493
	SRR8316907	Gold flowering stage	144.710
	SRR8316908	Gold flowering stage	158.634
SRP132670	SRR6706286	Control	43.957
	SRR6706287	Light intensity 50%	50.315
	SRR6706288	Light intensity 20%	54.327
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.931
	CNS0095593	Slightly white alabastrum(diploid) 2	17.431
	CNS0095594	Slightly white alabastrum(diploid) 3	17.967
	CNS0095595	Whole white alabastrum(diploid) 2	16.200
	CNS0095596	Whole white alabastrum(diploid) 3	17.660
	CNS0095597	Whole white alabastrum(diploid) 4	15.692
	CNS0095598	Silvery flower (diploied) 1	34.024
	CNS0095599	Silvery flower (diploied) 2	45.323
	CNS0095600	Silvery flower (diploied) 3	82.525
	CNS0095601	Golden flower (diploid) 1	43.703
	CNS0095602	Golden flower (diploid) 2	62.491
	CNS0095603	Golden flower (diploid) 3	63.535
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.185
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.120
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.020
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.209
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.897
	CNS0095610	Silvery flower (tetraploid) 1	135.383
	CNS0095611	Silvery flower (tetraploid) 2	137.819
	CNS0095612	Silvery flower (tetraploid) 3	168.525
	CNS0095613	Golden flower (tetraploid) 1	148.582
	CNS0095614	Golden flower (tetraploid) 2	184.182
	CNS0095615	Golden flower (tetraploid) 3	135.891
CRA001975	CRR073297	Stem 1	24.338
	CRR073298	Stem 2	28.055
	CRR073299	Stem 3	29.309
	CRR073300	Leaf 1	40.623
	CRR073301	Leaf 2	38.833
	CRR073302	Leaf 3	43.520
	CRR073303	Juvenile bud 1	40.944
	CRR073304	Juvenile bud 2	84.975
	CRR073305	Juvenile bud 3	29.104
	CRR073306	Third green 1	181.209
	CRR073307	Third green 2	67.955
	CRR073308	Third green 3	97.438
	CRR073309	Second white 1	106.207
	CRR073310	Second white 2	153.391
	CRR073311	Second white 3	128.020
	CRR073312	Silver flowering 1	96.933
	CRR073313	Silver flowering 2	78.630
	CRR073314	Silver flowering 3	83.508
	CRR073315	Gold flowering 1	8.052
	CRR073316	Gold flowering 2	4.955
	CRR073317	Gold flowering 3	5.743
	CRR073318	Tawny withering 1	15.448
	CRR073319	Tawny withering 2	14.556
	CRR073320	Tawny withering 3	18.592