Gene detail

Detail information of GWHGAAZE016208

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDX97115.1	6.1862E-177	BnaC09g45100D [Brassica napus]
Swissprot	tr\|Q9SGZ5\|BXL7_ARATH	6E-145	Probable beta-D-xylosidase 7 (Precursor)
trEMBL	tr\|A0A078E509\|A0A078E509_BRANA	2E-177	BnaC09g45100D protein {ECO:0000313\|EMBL:CDX97115.1}
TAIR10	AT1G78060.1	4E-124	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71633289	71644887	-
GWHAAZE00000004	mRNA	71633289	71644887	-
GWHAAZE00000004	exon	71644862	71644887	-
GWHAAZE00000004	exon	71643261	71643486	-
GWHAAZE00000004	exon	71641547	71641852	-
GWHAAZE00000004	exon	71637659	71637828	-
GWHAAZE00000004	exon	71634998	71635178	-
GWHAAZE00000004	exon	71634420	71634762	-
GWHAAZE00000004	exon	71633289	71633872	-
GWHAAZE00000004	CDS	71644862	71644887	-
GWHAAZE00000004	CDS	71643261	71643486	-
GWHAAZE00000004	CDS	71641547	71641852	-
GWHAAZE00000004	CDS	71637659	71637828	-
GWHAAZE00000004	CDS	71634998	71635178	-
GWHAAZE00000004	CDS	71634420	71634762	-
GWHAAZE00000004	CDS	71633289	71633872	-

Transcript Sequence
>GWHTAAZE016228 ATGGCCTTTGGTCCAGCATATAAGAGCCGCCTCACGCTCGACGAGAAAGTTTCTCAGCTAGTTAACACCGCGCCGGCGATTCCCCGGCTCGATATCCCGGCCTACGAGTGGTGGTCCGAGGCCTTGCACGGCGTAGCCGATGCCGGCTACGGCGTTGAATTTAACGGCCGGATCAAGAATGCCACGAGTTTCCCTCAAGTCATTCTTACTGCCGCTTCGTTTGATTCGAAGCTTTGGTATCGTATTGGTCAGGTGATTGGAAAGGAGGCAAGAGCAGTGTACAATGAAGGGCAAACAAAGGGGATGACATTCTGGGCGCCAAACATAAATGTATTTAGGGACCCAAGATGGGGAAGAGGGCAAGAGACACCTGGTGAAGACCCGTTGGTCACCGGCAAATATGCAGTTTCCTATGTGAGAGGGATTCAAGGTGATGTGTTTGAAGGTGGGAAGCTCTTCACCAATGGCCCTCTTCAGGCCTCTGCTTGCTGCAAGCATTTCACTGCCTATGATTTGGATCATTGGAAAGGCATTAATCGCTTTGAATTTGATGCTAAGGTGAGTAAACAAGATATGGCGGATACATACCAACCACCATTTAAGAGCTGCATAAAAGAAGGAAGAGCAAGTGGGATAATGTGCGCTTACAACAGAGTCAATGGCGTCCCCAATTGTGCTGATTACAATCTCTTATCCAACATTGCTCGTCGCCAGTGGAATTTTCATGGGCATGGATGTCAACTGTGGTTCTTACTTGAAGAACTACACCAAATCAGCAATTCAAAAGAAAAGGTATCAGAATCCCAAGTAGACAGAGCCCTCCACAATCTCTTCTCCATTAGAATAAGACTAGGCCTCTTCAATGGCAACCCAACCACCCTTCTTTACGGCAACATTGGTCCAGACCAGGGGTGCAATGCAGTGAACTGTACCTCTGCTTCGATCAAAGAGGCAGTGGCGGTGGCAAGAGAGGCCGAATATGTTGTAATGTTTATGGGGTTGGATCAGAGTCAAGAACGCGAGGATCATGATCGTGTGGATCTGGTCCTCCCGGGGAAGCAACAGAGTCTTATTGAGAGTGTTGCCAAAGTTGCCAGGAAGCCAGTCGTTCTCGTTATGATATGTGGAGGTCCGGTTGATATTTCCTTTGCCAAGTATAACCCGAAGATTGGAAGCATCTTGTGGGCTGGGTACCCGGGCGAAGCCGGAGGAATTGCAATAGCGGAAATCATCTTTGGTGACCATAACCCAGGAGGAAAGTTACCCATCACTTGGTATCCTAAAGATTTCATCAAAGTACCAATGACAGACATGAGAATGCGCGCCGACAAATCTTCGGGCTATCCAGGACGCACTTACAGATTCTACACTGGGAAACACATTTACGAATTCGGGTATGGACTAAGCTACTCAAAATATACCTACAAATTTGCCTCAGTTACCCAAAAGAAGCTTGACTTGAGCCAATTATTGACTACTCAAGCATCTGAAAACTCAGACTCGGTTCGTTACGTGTCAGTTTCGGAAATGGGCACAAAGTTGTGTGAGCGAAATTCTCGGCTAAAGTGGGAGTTAGCAATGAGGGGAGATGGCGGTAAGCACCCGGTGTTGCTATTTGTAAAACAGGCCAAGATCAGAGATGGGCATTTCATCAAACAATTGGTGGGCTTCGAACCTGTGGCTTTGGATGCAGGGGAGAGAGATGAAATCGAGTTCGTACTGAACCCTTGCGAGCACCTAAGCAGAGCTAACGAAGATGGTTTGATGGTGATCGAGGAGGGGACCCGGCACCTGATTGTAGGAGAGAAAGAATACACCATTGATGTTGTAGTTTGA

Network for GWHGAAZE016208

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0297

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	56	265	5.70E-26
PF01915.23	Glyco_hydro_3_C	148	470	2.70E-40
PF14310.7	Fn3-like	536	602	1.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.064
	SRR3591706	second leaf	16.911
	SRR3591707	mature leaf	2.402
	SRR3591708	Shoot apex	16.655
	SRR3591709	Stem	10.164
	SRR3591710	White floral bud	3.466
	SRR3591711	White flower	4.331
	SRR3591712	Green floral bud	3.261
	SRR3591713	Yellow flower	0.202
SRP173429	SRR8316895	Juvenile bud stage	9.444
	SRR8316896	Juvenile bud stage	8.883
	SRR8316897	Juvenile bud stage	2.472
	SRR8316894	Third green stage	3.923
	SRR8316900	Third green stage	6.615
	SRR8316901	Third green stage	6.113
	SRR8316898	Complete white stage	0.257
	SRR8316899	Complete white stage	4.586
	SRR8316903	Complete white stage	0.917
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.105
	SRR8316905	Silver flowering stage	0.089
	SRR8316906	Gold flowering stage	0.030
	SRR8316907	Gold flowering stage	0.038
	SRR8316908	Gold flowering stage	0.047
SRP132670	SRR6706286	Control	5.469
	SRR6706287	Light intensity 50%	5.642
	SRR6706288	Light intensity 20%	4.869
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.321
	CNS0095593	Slightly white alabastrum(diploid) 2	12.511
	CNS0095594	Slightly white alabastrum(diploid) 3	6.944
	CNS0095595	Whole white alabastrum(diploid) 2	8.359
	CNS0095596	Whole white alabastrum(diploid) 3	5.034
	CNS0095597	Whole white alabastrum(diploid) 4	5.437
	CNS0095598	Silvery flower (diploied) 1	12.403
	CNS0095599	Silvery flower (diploied) 2	12.352
	CNS0095600	Silvery flower (diploied) 3	3.768
	CNS0095601	Golden flower (diploid) 1	10.582
	CNS0095602	Golden flower (diploid) 2	4.565
	CNS0095603	Golden flower (diploid) 3	4.711
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.548
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.791
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.646
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.503
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.904
	CNS0095610	Silvery flower (tetraploid) 1	0.654
	CNS0095611	Silvery flower (tetraploid) 2	1.834
	CNS0095612	Silvery flower (tetraploid) 3	0.827
	CNS0095613	Golden flower (tetraploid) 1	0.094
	CNS0095614	Golden flower (tetraploid) 2	0.555
	CNS0095615	Golden flower (tetraploid) 3	0.058
CRA001975	CRR073297	Stem 1	20.481
	CRR073298	Stem 2	20.595
	CRR073299	Stem 3	25.513
	CRR073300	Leaf 1	13.982
	CRR073301	Leaf 2	11.579
	CRR073302	Leaf 3	13.686
	CRR073303	Juvenile bud 1	7.418
	CRR073304	Juvenile bud 2	1.852
	CRR073305	Juvenile bud 3	10.388
	CRR073306	Third green 1	0.287
	CRR073307	Third green 2	0.176
	CRR073308	Third green 3	0.349
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.048
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.026
	CRR073313	Silver flowering 2	0.019
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.063
	CRR073316	Gold flowering 2	6.177
	CRR073317	Gold flowering 3	5.761
	CRR073318	Tawny withering 1	14.310
	CRR073319	Tawny withering 2	7.284
	CRR073320	Tawny withering 3	17.388