Gene detail

Detail information of GWHGAAZE016209

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU36519.1	0	hypothetical protein MIMGU_mgv1a006265mg [Erythranthe guttata]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	8E-14	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|A0A022R962\|A0A022R962_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU36519.1}
TAIR10	AT1G78070.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71658165	71664549	+
GWHAAZE00000004	mRNA	71658165	71664549	+
GWHAAZE00000004	exon	71658165	71658317	+
GWHAAZE00000004	exon	71658586	71658753	+
GWHAAZE00000004	exon	71659619	71659705	+
GWHAAZE00000004	exon	71662310	71662444	+
GWHAAZE00000004	exon	71662540	71662650	+
GWHAAZE00000004	exon	71662733	71662824	+
GWHAAZE00000004	exon	71663151	71663259	+
GWHAAZE00000004	exon	71663377	71663463	+
GWHAAZE00000004	exon	71664136	71664549	+
GWHAAZE00000004	CDS	71658165	71658317	+
GWHAAZE00000004	CDS	71658586	71658753	+
GWHAAZE00000004	CDS	71659619	71659705	+
GWHAAZE00000004	CDS	71662310	71662444	+
GWHAAZE00000004	CDS	71662540	71662650	+
GWHAAZE00000004	CDS	71662733	71662824	+
GWHAAZE00000004	CDS	71663151	71663259	+
GWHAAZE00000004	CDS	71663377	71663463	+
GWHAAZE00000004	CDS	71664136	71664549	+

Transcript Sequence
>GWHTAAZE016229 ATGGCGCAGTTTCAGAACCATGAATATGAGGACATGGTTGATGAGTATTACGACATCACCAATGTTGATGATAACCCATTTGACAACATTGAGTCGAAGAGCAACAGTGTTGATGACTCACTTGACTCAGACTTCGAGGACGATGGGGACCAGGAAAAGCAGAATACTGATACATCAGCTCTAGAAGCTAGGAAAGGAAAAGATATTCAGGGAATTCCTTGGGAGAGGTTCAATTTCACTCGAGACAAATACCGTGAATCAAGATTGAAGCAATACAAAAATTATGAAAACCTCTCGCTCTCTCGCCAAGAGCTTGATAAGGAGTGCAAGCAAGTGGAGAAAGGCCATAGCTTCTATGATTTTCAATTCAATACAAGGATCGCCAAATCGACAATTGTGCATTTTCAGCTGAGGAACCTATTATGGGCGACCTCGAAACATGACGTGTACCTTATGCAAAACTACTCAGTAATGCACTGGTCCGCACTTCTAAGGAGGGGCAAAGAAGTACTCAATGTCGCCACACCAATAGTTCCCACAATAAACAACCCTGGGTCTTTGGCACAGACACTTTCTAGAGTTCAGATTAGCACTATGGCTGTTAAAGACAATCTAATGGTAGCTGGCGGTTTTCAAGGGGAACTCATCTGCAAGTATTTAAATCAACATGGAGTTGCCTTTAGCACAAAAGTATCCCCAGATGACAATGCTATAACTAACGCTGTGGACATATACCATAACTCCAACGGGTCAATGAGGGTTATGACTGCAAATAATGATGCTCAAGTACGAGTCTTTGATGCCTCTGGGAATTTCGCTTGCCTTAATCAATTCTCCTTCCCATGGTCTGTGAATAATACCTCTGTTAGTCCTGATGGTAAATTGCTTGCTGTTCTCGGGGACAGTGCCGAGTGCCTGCTTGCTGATACCCAATCAGGGAAGGTGATTGGAAACCTCAAGGGGCACCTTGACTATTCATTCACATCAGCATGGCACCCAGACGGCCAAATTTTGGCAACTGGGAACCAAGACACCACATGCAGACTTTGGGACATAAGAAACCTATCCGAGTCCTTGACCATACTCAAGGGCCATATGGGTGCCATCAGAGCCATTAAGTTCACCTCGGATGGCCGGTTCATGGCCATGGCTGAACCGGCCGACTTTGTTCACATCTTCGATACGCAATCGGATTATACCCAAGGGCAAGAGATTGATCTTTTTGGTGAGATTGCTGGAATATCCTTCAGCCCGGATAATGAAGCACTCTTTGTTGGGGTTGCAGACCGGACCTACGGTAGCGTATTGGAGTTTGACCGGAAACATTACAACCAGTATATGGGCTCTGTTCTATAA

Network for GWHGAAZE016209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	314	351	3.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.801
	SRR3591706	second leaf	24.063
	SRR3591707	mature leaf	36.682
	SRR3591708	Shoot apex	25.466
	SRR3591709	Stem	25.136
	SRR3591710	White floral bud	28.260
	SRR3591711	White flower	23.867
	SRR3591712	Green floral bud	27.070
	SRR3591713	Yellow flower	14.380
SRP173429	SRR8316895	Juvenile bud stage	10.235
	SRR8316896	Juvenile bud stage	9.801
	SRR8316897	Juvenile bud stage	5.535
	SRR8316894	Third green stage	7.016
	SRR8316900	Third green stage	10.926
	SRR8316901	Third green stage	13.379
	SRR8316898	Complete white stage	5.472
	SRR8316899	Complete white stage	25.579
	SRR8316903	Complete white stage	10.409
	SRR8316902	Silver flowering stage	9.370
	SRR8316904	Silver flowering stage	12.016
	SRR8316905	Silver flowering stage	5.516
	SRR8316906	Gold flowering stage	19.289
	SRR8316907	Gold flowering stage	14.355
	SRR8316908	Gold flowering stage	18.429
SRP132670	SRR6706286	Control	7.739
	SRR6706287	Light intensity 50%	6.616
	SRR6706288	Light intensity 20%	10.029
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.269
	CNS0095593	Slightly white alabastrum(diploid) 2	17.029
	CNS0095594	Slightly white alabastrum(diploid) 3	9.540
	CNS0095595	Whole white alabastrum(diploid) 2	12.818
	CNS0095596	Whole white alabastrum(diploid) 3	7.636
	CNS0095597	Whole white alabastrum(diploid) 4	8.128
	CNS0095598	Silvery flower (diploied) 1	15.894
	CNS0095599	Silvery flower (diploied) 2	13.165
	CNS0095600	Silvery flower (diploied) 3	12.280
	CNS0095601	Golden flower (diploid) 1	16.685
	CNS0095602	Golden flower (diploid) 2	11.003
	CNS0095603	Golden flower (diploid) 3	12.084
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.670
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.256
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.390
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.405
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.795
	CNS0095610	Silvery flower (tetraploid) 1	13.570
	CNS0095611	Silvery flower (tetraploid) 2	14.109
	CNS0095612	Silvery flower (tetraploid) 3	9.588
	CNS0095613	Golden flower (tetraploid) 1	7.634
	CNS0095614	Golden flower (tetraploid) 2	11.362
	CNS0095615	Golden flower (tetraploid) 3	9.218
CRA001975	CRR073297	Stem 1	12.046
	CRR073298	Stem 2	6.930
	CRR073299	Stem 3	2.550
	CRR073300	Leaf 1	8.827
	CRR073301	Leaf 2	9.751
	CRR073302	Leaf 3	1.584
	CRR073303	Juvenile bud 1	2.399
	CRR073304	Juvenile bud 2	0.300
	CRR073305	Juvenile bud 3	2.168
	CRR073306	Third green 1	0.226
	CRR073307	Third green 2	0.068
	CRR073308	Third green 3	0.229
	CRR073309	Second white 1	0.681
	CRR073310	Second white 2	0.597
	CRR073311	Second white 3	0.704
	CRR073312	Silver flowering 1	1.886
	CRR073313	Silver flowering 2	0.544
	CRR073314	Silver flowering 3	1.539
	CRR073315	Gold flowering 1	2.764
	CRR073316	Gold flowering 2	4.027
	CRR073317	Gold flowering 3	1.783
	CRR073318	Tawny withering 1	5.561
	CRR073319	Tawny withering 2	8.025
	CRR073320	Tawny withering 3	4.379