Gene detail

Detail information of GWHGAAZE016235

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU36519.1	0	hypothetical protein MIMGU_mgv1a006265mg [Erythranthe guttata]
Swissprot	tr\|O22785\|PR19B_ARATH	4E-11	Pre-mRNA-processing factor 19 homolog 2 {ECO:0000305}
trEMBL	tr\|A0A022R962\|A0A022R962_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU36519.1}
TAIR10	AT1G78070.1	1E-161	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	72034101	72040363	+
GWHAAZE00000004	mRNA	72034101	72040363	+
GWHAAZE00000004	exon	72034101	72034253	+
GWHAAZE00000004	exon	72034520	72034687	+
GWHAAZE00000004	exon	72035550	72035636	+
GWHAAZE00000004	exon	72038256	72038390	+
GWHAAZE00000004	exon	72038486	72038596	+
GWHAAZE00000004	exon	72038675	72038766	+
GWHAAZE00000004	exon	72039093	72039201	+
GWHAAZE00000004	exon	72039319	72039405	+
GWHAAZE00000004	exon	72040076	72040363	+
GWHAAZE00000004	CDS	72034101	72034253	+
GWHAAZE00000004	CDS	72034520	72034687	+
GWHAAZE00000004	CDS	72035550	72035636	+
GWHAAZE00000004	CDS	72038256	72038390	+
GWHAAZE00000004	CDS	72038486	72038596	+
GWHAAZE00000004	CDS	72038675	72038766	+
GWHAAZE00000004	CDS	72039093	72039201	+
GWHAAZE00000004	CDS	72039319	72039405	+
GWHAAZE00000004	CDS	72040076	72040363	+

Transcript Sequence
>GWHTAAZE016255 ATGGCGCAGTTTCAGAACCATGAATATGAGGACATGGTTGATGAGTATTACGACATCACCAATGTTGATGATAACCCATTTGACAACATTGAGTCGAAGAGCAACAGTGTTGATGACTCACTTGACTCAGACTTCGAGGACGATGGGGACCAGGAAAAGCAGAATACTGATACATCAGCTCTAGAAGCTAGGAAAGGAAAAGATATTCAGGGAATTCCTTGGGAGAGGTTCAATTTCACTCGAGACAAATACCGTGAATCAAGATTGAAGCAATACAAAAATTATGAAAACCTCTCGCTCTCTCGCCAAGAGCTTGATAAGGAGTGCAAGCAAGTGGAGAAAGGCCATAGCTTCTATGATTTTCAATTCAATACAAGGATCGTCAAATCGACAATTGTGCATTTTCAGCTGAGGAACCTATTATGGGCGACCTCGAAACATGACGTGTACCTTATGCAAAACTACTCAGTAATGCACTGGTCCGCACTTCTAAGGAGGGGCAAAGAAGTACTCAATGTCGCCACACCAATAGTTCCCACAATAAACAACCCTGGGTCTTTGGCACAGACACTTTCTAGAGTTCAGATTAGCACTATGGCTGTTAAAGACAATCTAATGGTAGCTGGCGGTTTTCAAGGGGAACTCATCTGCAAGTATTTAAATCAACATGGAGTTGCCTTTAGCACAAAAGTATCCCCAGATGACAATGCTATAACTAACGCTGTGGACATATACCATAACTCCAACGGGTCAATGAGGGTTATGACTGCAAATAATGATGCTCAAGTACGAGTCTTTGATGCCTCTGGGAATTTCGCTTGCCTTAATCAATTCTCCTTCCCATGGTCTGTGAATAATACCTCTGTTAGTCCTGATGGTAAATTGCTTGCTGTTCTCGGGGACAGTGCCGAGTGCCTGCTTGCTGATACCCAATCAGGGAAGGTGATTGGAAACCTCAAGGGGCACCTTGACTATTCATTCACATCAGCATGGCACCCAGACGGCCAAATTTTGGCAACTGGGAACCAAGACACCACATGCAGACTTTGGGACATAAGAAACCTATCCGAGTCCTTGACCATACTCAAGGGCCATATGGGTGCCATCAGAGCCATTAAGTTCACCTCGGATGGCCGGTTCATGGCCATGGCTGAACCGGCCGACTTTGTTCACATCTTCGATCACGCTAATCGGATTATACCCAAGGGCAAGAGATTGATCTTTTGGTGA

Network for GWHGAAZE016235

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	314	351	3.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.035
	SRR3591706	second leaf	14.147
	SRR3591707	mature leaf	12.834
	SRR3591708	Shoot apex	13.692
	SRR3591709	Stem	17.062
	SRR3591710	White floral bud	17.308
	SRR3591711	White flower	13.089
	SRR3591712	Green floral bud	17.998
	SRR3591713	Yellow flower	7.738
SRP173429	SRR8316895	Juvenile bud stage	5.600
	SRR8316896	Juvenile bud stage	8.233
	SRR8316897	Juvenile bud stage	4.466
	SRR8316894	Third green stage	4.292
	SRR8316900	Third green stage	8.864
	SRR8316901	Third green stage	8.965
	SRR8316898	Complete white stage	4.888
	SRR8316899	Complete white stage	18.323
	SRR8316903	Complete white stage	8.324
	SRR8316902	Silver flowering stage	7.383
	SRR8316904	Silver flowering stage	8.548
	SRR8316905	Silver flowering stage	5.377
	SRR8316906	Gold flowering stage	13.886
	SRR8316907	Gold flowering stage	13.789
	SRR8316908	Gold flowering stage	15.420
SRP132670	SRR6706286	Control	3.922
	SRR6706287	Light intensity 50%	7.522
	SRR6706288	Light intensity 20%	6.492
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.291
	CNS0095593	Slightly white alabastrum(diploid) 2	3.984
	CNS0095594	Slightly white alabastrum(diploid) 3	3.875
	CNS0095595	Whole white alabastrum(diploid) 2	2.766
	CNS0095596	Whole white alabastrum(diploid) 3	4.744
	CNS0095597	Whole white alabastrum(diploid) 4	4.447
	CNS0095598	Silvery flower (diploied) 1	10.106
	CNS0095599	Silvery flower (diploied) 2	7.857
	CNS0095600	Silvery flower (diploied) 3	8.011
	CNS0095601	Golden flower (diploid) 1	7.743
	CNS0095602	Golden flower (diploid) 2	8.782
	CNS0095603	Golden flower (diploid) 3	9.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.143
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.943
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.797
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.465
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.553
	CNS0095610	Silvery flower (tetraploid) 1	9.803
	CNS0095611	Silvery flower (tetraploid) 2	13.137
	CNS0095612	Silvery flower (tetraploid) 3	8.828
	CNS0095613	Golden flower (tetraploid) 1	4.675
	CNS0095614	Golden flower (tetraploid) 2	9.574
	CNS0095615	Golden flower (tetraploid) 3	4.463
CRA001975	CRR073297	Stem 1	3.319
	CRR073298	Stem 2	5.893
	CRR073299	Stem 3	1.747
	CRR073300	Leaf 1	5.587
	CRR073301	Leaf 2	6.679
	CRR073302	Leaf 3	0.988
	CRR073303	Juvenile bud 1	1.433
	CRR073304	Juvenile bud 2	0.147
	CRR073305	Juvenile bud 3	2.356
	CRR073306	Third green 1	0.140
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.314
	CRR073309	Second white 1	0.380
	CRR073310	Second white 2	0.507
	CRR073311	Second white 3	0.918
	CRR073312	Silver flowering 1	0.515
	CRR073313	Silver flowering 2	1.883
	CRR073314	Silver flowering 3	0.686
	CRR073315	Gold flowering 1	2.197
	CRR073316	Gold flowering 2	3.481
	CRR073317	Gold flowering 3	1.455
	CRR073318	Tawny withering 1	2.806
	CRR073319	Tawny withering 2	5.066
	CRR073320	Tawny withering 3	1.868