Gene detail

Detail information of GWHGAAZE016250

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007205367.1	8.4861E-153	hypothetical protein PRUPE_ppa007221mg [Prunus persica]
Swissprot	tr\|Q67XC9\|TPPD_ARATH	6E-139	Probable trehalose-phosphate phosphatase D
trEMBL	tr\|M5VZM9\|M5VZM9_PRUPE	3E-153	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}
TAIR10	AT1G35910.1	2E-111	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	72174307	72177544	+
GWHAAZE00000004	mRNA	72174307	72177544	+
GWHAAZE00000004	exon	72174307	72174501	+
GWHAAZE00000004	exon	72174753	72174893	+
GWHAAZE00000004	exon	72175014	72175085	+
GWHAAZE00000004	exon	72175354	72175464	+
GWHAAZE00000004	exon	72175557	72175613	+
GWHAAZE00000004	exon	72175905	72176006	+
GWHAAZE00000004	exon	72176410	72176487	+
GWHAAZE00000004	exon	72176938	72177007	+
GWHAAZE00000004	exon	72177105	72177175	+
GWHAAZE00000004	exon	72177485	72177544	+
GWHAAZE00000004	CDS	72174307	72174501	+
GWHAAZE00000004	CDS	72174753	72174893	+
GWHAAZE00000004	CDS	72175014	72175085	+
GWHAAZE00000004	CDS	72175354	72175464	+
GWHAAZE00000004	CDS	72175557	72175613	+
GWHAAZE00000004	CDS	72175905	72176006	+
GWHAAZE00000004	CDS	72176410	72176487	+
GWHAAZE00000004	CDS	72176938	72177007	+
GWHAAZE00000004	CDS	72177105	72177175	+
GWHAAZE00000004	CDS	72177485	72177544	+

Transcript Sequence
>GWHTAAZE016270 TCACCAGCTAGAGTGGCAGGTGGCGGCAGTACTGGTGGTGGGTATGTTCGGATTTCGAGAAAAAAGTTGTTGAATAAACTGGAATCTGGAGGAGGAAGAACTAGGATTAATTCTTGGGTTGAGTCTATGAGAGCTTCTTCTCCAACTCGGAAATCTATAGATGAAAATGAAGATGAAGATCAAAGTTCTTGGATTGTTAAACATCCGTCGGCATTGGGAATGTTTGAGGAGATAATGAAAGGTTCGAAGGGGAAGGAGATAGTAGTGTTTCTTGATTATGATGGTACTCTTTCTCCCATTGTTGATGATCCAGATAGAGCTTTCATGACTAACGAGATGAGAGAAGCAGTAAGGGAGGTGGCAAAGTACTTCCCTACGGCAATCGTAAGCGGAAGGTGCAGAGCCAAGGTATATGGATTTGTAAGGTTATCACAGCTTTATTATGCTGGTAGTCATGGAATGGACATCAAAGGACCAACCAGTGCCAAAGGTCCCAAATGCCCAATTATGAGCAAAAATGATAGTCAAGCAATTCTGTTCCAACCAGCAAGAGAAATTTTACCTATGATGGATGAGGTGTACAAAGCTTTGTTGGAGAAGACAAAATCCACCCCGGGTGCTAGGGTGGAAAACAACAAATTTTGCCTCGCCGTACACTTTCGTTGTGTTGATGAAAAGAGATGGACCGGTCTATTTGAGCAAGTTAGATCCGTGCTCAAGGATTACCCAAAGCTCAGACTAACTCAAGGGAGGAAGGTTTTAGAGATTCGTCCAACTATCAAATGGGACAAGGGAAAAGCCCTTGAGTTCTTGTTAGAGTCGCTTGGATATGCGAATTCAAATGACGTTTTGCCTGTTTACATTGGAGATGATCGAACTGACGAGGATGCATTTAAGGTTATGTACTTCTTGCTCCGTTTGGTTGCATGGAAACAATCCTTGCTACGAGGACATTAG

Network for GWHGAAZE016250

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02358.17	Trehalose_PPase	90	301	5.10E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01087	otsB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.308
	SRR3591706	second leaf	10.054
	SRR3591707	mature leaf	13.711
	SRR3591708	Shoot apex	7.116
	SRR3591709	Stem	15.637
	SRR3591710	White floral bud	4.975
	SRR3591711	White flower	3.681
	SRR3591712	Green floral bud	0.998
	SRR3591713	Yellow flower	0.809
SRP173429	SRR8316895	Juvenile bud stage	2.338
	SRR8316896	Juvenile bud stage	1.633
	SRR8316897	Juvenile bud stage	1.849
	SRR8316894	Third green stage	0.568
	SRR8316900	Third green stage	1.900
	SRR8316901	Third green stage	1.353
	SRR8316898	Complete white stage	2.650
	SRR8316899	Complete white stage	4.236
	SRR8316903	Complete white stage	2.172
	SRR8316902	Silver flowering stage	1.311
	SRR8316904	Silver flowering stage	3.835
	SRR8316905	Silver flowering stage	1.783
	SRR8316906	Gold flowering stage	4.208
	SRR8316907	Gold flowering stage	9.015
	SRR8316908	Gold flowering stage	14.549
SRP132670	SRR6706286	Control	0.859
	SRR6706287	Light intensity 50%	1.340
	SRR6706288	Light intensity 20%	1.726
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.177
	CNS0095593	Slightly white alabastrum(diploid) 2	0.416
	CNS0095594	Slightly white alabastrum(diploid) 3	0.776
	CNS0095595	Whole white alabastrum(diploid) 2	0.099
	CNS0095596	Whole white alabastrum(diploid) 3	0.699
	CNS0095597	Whole white alabastrum(diploid) 4	0.495
	CNS0095598	Silvery flower (diploied) 1	0.514
	CNS0095599	Silvery flower (diploied) 2	0.380
	CNS0095600	Silvery flower (diploied) 3	4.599
	CNS0095601	Golden flower (diploid) 1	0.298
	CNS0095602	Golden flower (diploid) 2	3.240
	CNS0095603	Golden flower (diploid) 3	3.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.264
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.293
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.981
	CNS0095610	Silvery flower (tetraploid) 1	7.484
	CNS0095611	Silvery flower (tetraploid) 2	2.135
	CNS0095612	Silvery flower (tetraploid) 3	2.829
	CNS0095613	Golden flower (tetraploid) 1	0.759
	CNS0095614	Golden flower (tetraploid) 2	6.190
	CNS0095615	Golden flower (tetraploid) 3	1.386
CRA001975	CRR073297	Stem 1	0.071
	CRR073298	Stem 2	0.107
	CRR073299	Stem 3	0.362
	CRR073300	Leaf 1	0.396
	CRR073301	Leaf 2	0.438
	CRR073302	Leaf 3	0.198
	CRR073303	Juvenile bud 1	0.427
	CRR073304	Juvenile bud 2	0.437
	CRR073305	Juvenile bud 3	1.024
	CRR073306	Third green 1	0.524
	CRR073307	Third green 2	0.573
	CRR073308	Third green 3	1.114
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	1.298
	CRR073313	Silver flowering 2	0.951
	CRR073314	Silver flowering 3	1.508
	CRR073315	Gold flowering 1	0.451
	CRR073316	Gold flowering 2	0.775
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.559
	CRR073319	Tawny withering 2	0.185
	CRR073320	Tawny withering 3	2.520