Gene detail

Detail information of GWHGAAZE016267

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01093.1	5.7437E-140	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ZPE4\|FBW2_ARATH	9E-113	F-box protein FBW2
trEMBL	tr\|A0A068U0F8\|A0A068U0F8_COFCA	2E-140	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP01093.1}
TAIR10	AT4G08980.5	3E-84	F-BOX WITH WD-40 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	72577803	72579445	+
GWHAAZE00000004	mRNA	72577803	72579445	+
GWHAAZE00000004	exon	72577803	72578107	+
GWHAAZE00000004	exon	72578806	72579445	+
GWHAAZE00000004	CDS	72577803	72578107	+
GWHAAZE00000004	CDS	72578806	72579445	+

Transcript Sequence
>GWHTAAZE016287 ATGGAGGGTGCTGATTTTAGATGCTGGGATGAACTAATACCGGACGCGCTAGGCTTAATCTTCCGTAATTTGCCAATCCAAGAGACGCTTACAGTGGTGCCAAGAGTATGCAAATCATGGAATAAAGCAGTGATGGATCCTTGTTGTTGGCAAGAGATTGACATTGAGGAATGTAACTATCGGTCCAACCCTGACAATATGGATCGGATGCTCCGAATGCTTATAACCCGAAGCTGTGGGTCACTTCAAAAGCTTTGCGTCTCGGGCCTCCAAAATGACCTCATCTTCTCCTTTGTTGCAGAGCATGCCCGTTCGCTCCACACACTACGATTGCCCTTTGGCAACATGACCGACGCAATTGTCGAGCAAGTAGCACTGAAATTCTCAACACTCACTTTCTTGGACTTGAGCTACTGCCCTAAAATCAGCGCACGCGCGTTAGAGGCGATTGGCAAGCATTGCAAGTCACTCGCCACACTTTGCTGGAACACGCACCCCCTCGACACGCGTGACAATCTCCCTCAGAACGACGAGGCGCACGCAATCGCCACCACCATGCCCAAGCTTGTGCGTCTTGAGATCGCGTATTTGCGCGTTGATGTGCTCGCGGTCCTCGAGATTGTCACTGTGTGCGCCTCACTCGAGTACCTGGACCTCAGGGGGTGTTGGGATGTGAAACTCGAGGAGAAGTTCCTATCGGAGAAATTCCCAAGGCTGAAAGTGGTTGGACCCCACGTGGTGGACCGGTATGAGAGGAATGACTGGGAGGAGTGCTCGGATTACTCTTCGGAGGAGGAGGACGAGGACTCATTTTATGAGGATTACGAGAGCTTGGATGATGGGATGTGGGATGAGGATGATGAGAGGATTGGAGGGTTGCAGCTAAGGTTTTATGAAGGTTTTGATGAGGATTCTTCTGGTTATGGTTGGCCTCCATCGCCTTAA

Network for GWHGAAZE016267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	8	53	0.00041

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.604
	SRR3591706	second leaf	33.677
	SRR3591707	mature leaf	26.177
	SRR3591708	Shoot apex	64.611
	SRR3591709	Stem	55.111
	SRR3591710	White floral bud	34.182
	SRR3591711	White flower	23.760
	SRR3591712	Green floral bud	58.221
	SRR3591713	Yellow flower	8.775
SRP173429	SRR8316895	Juvenile bud stage	21.986
	SRR8316896	Juvenile bud stage	32.326
	SRR8316897	Juvenile bud stage	14.227
	SRR8316894	Third green stage	15.123
	SRR8316900	Third green stage	59.252
	SRR8316901	Third green stage	53.931
	SRR8316898	Complete white stage	14.345
	SRR8316899	Complete white stage	92.996
	SRR8316903	Complete white stage	20.668
	SRR8316902	Silver flowering stage	4.385
	SRR8316904	Silver flowering stage	6.520
	SRR8316905	Silver flowering stage	2.519
	SRR8316906	Gold flowering stage	9.716
	SRR8316907	Gold flowering stage	6.148
	SRR8316908	Gold flowering stage	10.018
SRP132670	SRR6706286	Control	71.901
	SRR6706287	Light intensity 50%	72.039
	SRR6706288	Light intensity 20%	79.997
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.868
	CNS0095593	Slightly white alabastrum(diploid) 2	42.104
	CNS0095594	Slightly white alabastrum(diploid) 3	20.269
	CNS0095595	Whole white alabastrum(diploid) 2	34.086
	CNS0095596	Whole white alabastrum(diploid) 3	30.804
	CNS0095597	Whole white alabastrum(diploid) 4	32.708
	CNS0095598	Silvery flower (diploied) 1	27.631
	CNS0095599	Silvery flower (diploied) 2	19.498
	CNS0095600	Silvery flower (diploied) 3	18.159
	CNS0095601	Golden flower (diploid) 1	28.698
	CNS0095602	Golden flower (diploid) 2	25.979
	CNS0095603	Golden flower (diploid) 3	25.550
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	86.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.827
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.474
	CNS0095610	Silvery flower (tetraploid) 1	16.599
	CNS0095611	Silvery flower (tetraploid) 2	24.846
	CNS0095612	Silvery flower (tetraploid) 3	10.964
	CNS0095613	Golden flower (tetraploid) 1	4.764
	CNS0095614	Golden flower (tetraploid) 2	13.743
	CNS0095615	Golden flower (tetraploid) 3	4.531
CRA001975	CRR073297	Stem 1	84.197
	CRR073298	Stem 2	87.992
	CRR073299	Stem 3	96.752
	CRR073300	Leaf 1	167.544
	CRR073301	Leaf 2	140.254
	CRR073302	Leaf 3	162.968
	CRR073303	Juvenile bud 1	170.948
	CRR073304	Juvenile bud 2	85.306
	CRR073305	Juvenile bud 3	212.711
	CRR073306	Third green 1	9.623
	CRR073307	Third green 2	14.024
	CRR073308	Third green 3	14.918
	CRR073309	Second white 1	7.631
	CRR073310	Second white 2	5.068
	CRR073311	Second white 3	3.057
	CRR073312	Silver flowering 1	0.979
	CRR073313	Silver flowering 2	2.923
	CRR073314	Silver flowering 3	2.373
	CRR073315	Gold flowering 1	19.233
	CRR073316	Gold flowering 2	19.953
	CRR073317	Gold flowering 3	26.306
	CRR073318	Tawny withering 1	146.197
	CRR073319	Tawny withering 2	92.328
	CRR073320	Tawny withering 3	123.020