Detail information of GWHGAAZE016282


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003634417.15.5092E-79PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera]
Swissprottr|Q8LFY8|ATL54_ARATH3E-40RING-H2 finger protein ATL54
trEMBLtr|A5BMY3|A5BMY3_VITVI2E-79Putative uncharacterized protein {ECO:0000313|EMBL:CAN61577.1}
TAIR10AT1G72220.12E-35RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7290781372909045+
GWHAAZE00000004mRNA7290781372909045+
GWHAAZE00000004exon7290781372908155+
GWHAAZE00000004exon7290844772909045+
GWHAAZE00000004CDS7290781372908155+
GWHAAZE00000004CDS7290844772909045+
Transcript Sequence

Network for GWHGAAZE016282

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21171601.60E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.042
SRR3591706second leaf2.203
SRR3591707mature leaf4.002
SRR3591708Shoot apex2.022
SRR3591709Stem124.350
SRR3591710White floral bud3.200
SRR3591711White flower4.305
SRR3591712Green floral bud1.669
SRR3591713Yellow flower8.424
SRP173429 SRR8316895Juvenile bud stage 5.480
SRR8316896Juvenile bud stage 5.309
SRR8316897Juvenile bud stage 1.156
SRR8316894Third green stage 1.421
SRR8316900Third green stage 2.745
SRR8316901Third green stage 2.030
SRR8316898Complete white stage 3.361
SRR8316899Complete white stage 1.474
SRR8316903Complete white stage 3.469
SRR8316902Silver flowering stage2.584
SRR8316904Silver flowering stage4.960
SRR8316905Silver flowering stage3.371
SRR8316906Gold flowering stage 13.421
SRR8316907Gold flowering stage 14.417
SRR8316908Gold flowering stage 18.625
SRP132670SRR6706286Control2.236
SRR6706287Light intensity 50%2.217
SRR6706288Light intensity 20%2.342
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.366
CNS0095593Slightly white alabastrum(diploid) 21.003
CNS0095594Slightly white alabastrum(diploid) 32.497
CNS0095595Whole white alabastrum(diploid) 20.527
CNS0095596Whole white alabastrum(diploid) 30.589
CNS0095597Whole white alabastrum(diploid) 40.538
CNS0095598Silvery flower (diploied) 10.512
CNS0095599Silvery flower (diploied) 20.652
CNS0095600Silvery flower (diploied) 34.656
CNS0095601Golden flower (diploid) 11.504
CNS0095602Golden flower (diploid) 23.320
CNS0095603Golden flower (diploid) 32.417
CNS0095604Slightly white alabastrum(tetraploid) 10.602
CNS0095605Slightly white alabastrum(tetraploid) 20.239
CNS0095606Slightly white alabastrum(tetraploid) 33.243
CNS0095607Whole white alabastrum(tetraploid) 10.277
CNS0095608Whole white alabastrum(tetraploid) 20.680
CNS0095609Whole white alabastrum(tetraploid) 32.605
CNS0095610Silvery flower (tetraploid) 12.321
CNS0095611Silvery flower (tetraploid) 23.484
CNS0095612Silvery flower (tetraploid) 310.337
CNS0095613Golden flower (tetraploid) 13.569
CNS0095614Golden flower (tetraploid) 24.034
CNS0095615Golden flower (tetraploid) 32.476
CRA001975CRR073297Stem 113.020
CRR073298Stem 28.405
CRR073299Stem 35.909
CRR073300Leaf 11.664
CRR073301Leaf 21.332
CRR073302Leaf 31.614
CRR073303Juvenile bud 10.230
CRR073304Juvenile bud 20.118
CRR073305Juvenile bud 30.412
CRR073306Third green 116.047
CRR073307Third green 211.208
CRR073308Third green 310.354
CRR073309Second white 116.531
CRR073310Second white 218.773
CRR073311Second white 317.887
CRR073312Silver flowering 127.340
CRR073313Silver flowering 232.634
CRR073314Silver flowering 327.206
CRR073315Gold flowering 11.270
CRR073316Gold flowering 23.067
CRR073317Gold flowering 31.162
CRR073318Tawny withering 130.938
CRR073319Tawny withering 220.110
CRR073320Tawny withering 344.922