Detail information of GWHGAAZE016284


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009622023.12.80488E-91PREDICTED: E3 ubiquitin-protein ligase ATL15-like [Nicotiana tomentosiformis]
Swissprottr|Q84W40|ATL11_ARATH4E-56RING-H2 finger protein ATL11 (Precursor)
trEMBLtr|M0ZPX8|M0ZPX8_SOLTU5E-86Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400005472}
TAIR10AT1G72200.11E-48RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7293646872937448+
GWHAAZE00000004mRNA7293646872937448+
GWHAAZE00000004exon7293646872937448+
GWHAAZE00000004CDS7293646872937448+
Transcript Sequence

Network for GWHGAAZE016284

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_253969.70E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.684
SRR3591706second leaf0.735
SRR3591707mature leaf1.175
SRR3591708Shoot apex0.434
SRR3591709Stem3.357
SRR3591710White floral bud0.946
SRR3591711White flower0.417
SRR3591712Green floral bud0.457
SRR3591713Yellow flower0.903
SRP173429 SRR8316895Juvenile bud stage 0.515
SRR8316896Juvenile bud stage 1.261
SRR8316897Juvenile bud stage 0.470
SRR8316894Third green stage 0.222
SRR8316900Third green stage 0.522
SRR8316901Third green stage 1.139
SRR8316898Complete white stage 0.314
SRR8316899Complete white stage 0.004
SRR8316903Complete white stage 0.313
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.029
SRR8316906Gold flowering stage 0.321
SRR8316907Gold flowering stage 0.142
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.922
SRR6706287Light intensity 50%0.345
SRR6706288Light intensity 20%0.401
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.174
CNS0095593Slightly white alabastrum(diploid) 20.135
CNS0095594Slightly white alabastrum(diploid) 30.449
CNS0095595Whole white alabastrum(diploid) 20.132
CNS0095596Whole white alabastrum(diploid) 30.222
CNS0095597Whole white alabastrum(diploid) 40.105
CNS0095598Silvery flower (diploied) 10.545
CNS0095599Silvery flower (diploied) 20.149
CNS0095600Silvery flower (diploied) 30.399
CNS0095601Golden flower (diploid) 10.605
CNS0095602Golden flower (diploid) 20.825
CNS0095603Golden flower (diploid) 30.549
CNS0095604Slightly white alabastrum(tetraploid) 10.178
CNS0095605Slightly white alabastrum(tetraploid) 20.067
CNS0095606Slightly white alabastrum(tetraploid) 30.741
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.140
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.002
CNS0095612Silvery flower (tetraploid) 30.149
CNS0095613Golden flower (tetraploid) 10.075
CNS0095614Golden flower (tetraploid) 20.083
CNS0095615Golden flower (tetraploid) 30.104
CRA001975CRR073297Stem 10.363
CRR073298Stem 21.099
CRR073299Stem 31.220
CRR073300Leaf 10.168
CRR073301Leaf 20.384
CRR073302Leaf 30.415
CRR073303Juvenile bud 10.077
CRR073304Juvenile bud 20.104
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.234
CRR073308Third green 30.174
CRR073309Second white 10.000
CRR073310Second white 20.142
CRR073311Second white 30.322
CRR073312Silver flowering 10.143
CRR073313Silver flowering 20.003
CRR073314Silver flowering 30.355
CRR073315Gold flowering 10.174
CRR073316Gold flowering 20.532
CRR073317Gold flowering 31.469
CRR073318Tawny withering 14.168
CRR073319Tawny withering 22.150
CRR073320Tawny withering 36.856