Detail information of GWHGAAZE016309


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI19236.31.117E-154unnamed protein product [Vitis vinifera]
Swissprottr|Q69QB8|CCD31_ORYSJ3E-95Cyclin-D3-1
trEMBLtr|E0CRT2|E0CRT2_VITVI4E-155Putative uncharacterized protein {ECO:0000313|EMBL:CBI19236.3}
TAIR10AT2G22490.19E-71Cyclin D2;1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7339185473394393-
GWHAAZE00000004mRNA7339185473394393-
GWHAAZE00000004exon7339185473392081-
GWHAAZE00000004exon7339217273392296-
GWHAAZE00000004exon7339263273392833-
GWHAAZE00000004exon7339310873393206-
GWHAAZE00000004exon7339329173393377-
GWHAAZE00000004exon7339408273394393-
GWHAAZE00000004CDS7339408273394393-
GWHAAZE00000004CDS7339329173393377-
GWHAAZE00000004CDS7339310873393206-
GWHAAZE00000004CDS7339263273392833-
GWHAAZE00000004CDS7339217273392296-
GWHAAZE00000004CDS7339185473392081-
Transcript Sequence

Network for GWHGAAZE016309

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0094


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.24Cyclin_N671948.80E-31
PF02984.20Cyclin_C1972884.00E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.985
SRR3591706second leaf1.438
SRR3591707mature leaf0.156
SRR3591708Shoot apex8.225
SRR3591709Stem1.724
SRR3591710White floral bud4.681
SRR3591711White flower1.509
SRR3591712Green floral bud4.573
SRR3591713Yellow flower0.078
SRP173429 SRR8316895Juvenile bud stage 2.771
SRR8316896Juvenile bud stage 11.906
SRR8316897Juvenile bud stage 2.750
SRR8316894Third green stage 3.982
SRR8316900Third green stage 9.851
SRR8316901Third green stage 9.102
SRR8316898Complete white stage 0.379
SRR8316899Complete white stage 1.840
SRR8316903Complete white stage 0.780
SRR8316902Silver flowering stage0.041
SRR8316904Silver flowering stage0.256
SRR8316905Silver flowering stage0.185
SRR8316906Gold flowering stage 0.456
SRR8316907Gold flowering stage 0.158
SRR8316908Gold flowering stage 0.666
SRP132670SRR6706286Control0.599
SRR6706287Light intensity 50%0.520
SRR6706288Light intensity 20%1.072
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.216
CNS0095593Slightly white alabastrum(diploid) 213.583
CNS0095594Slightly white alabastrum(diploid) 321.691
CNS0095595Whole white alabastrum(diploid) 220.591
CNS0095596Whole white alabastrum(diploid) 321.529
CNS0095597Whole white alabastrum(diploid) 419.305
CNS0095598Silvery flower (diploied) 11.822
CNS0095599Silvery flower (diploied) 21.874
CNS0095600Silvery flower (diploied) 31.166
CNS0095601Golden flower (diploid) 13.047
CNS0095602Golden flower (diploid) 21.843
CNS0095603Golden flower (diploid) 31.635
CNS0095604Slightly white alabastrum(tetraploid) 110.821
CNS0095605Slightly white alabastrum(tetraploid) 210.792
CNS0095606Slightly white alabastrum(tetraploid) 32.478
CNS0095607Whole white alabastrum(tetraploid) 112.996
CNS0095608Whole white alabastrum(tetraploid) 210.062
CNS0095609Whole white alabastrum(tetraploid) 36.981
CNS0095610Silvery flower (tetraploid) 10.513
CNS0095611Silvery flower (tetraploid) 20.967
CNS0095612Silvery flower (tetraploid) 31.742
CNS0095613Golden flower (tetraploid) 10.054
CNS0095614Golden flower (tetraploid) 20.155
CNS0095615Golden flower (tetraploid) 30.238
CRA001975CRR073297Stem 12.352
CRR073298Stem 23.235
CRR073299Stem 31.650
CRR073300Leaf 13.885
CRR073301Leaf 23.378
CRR073302Leaf 30.692
CRR073303Juvenile bud 11.999
CRR073304Juvenile bud 21.120
CRR073305Juvenile bud 30.317
CRR073306Third green 10.656
CRR073307Third green 20.500
CRR073308Third green 30.786
CRR073309Second white 10.128
CRR073310Second white 20.205
CRR073311Second white 30.569
CRR073312Silver flowering 10.461
CRR073313Silver flowering 20.196
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.475
CRR073316Gold flowering 20.314
CRR073317Gold flowering 30.375
CRR073318Tawny withering 11.952
CRR073319Tawny withering 22.244
CRR073320Tawny withering 33.592