Gene detail

Detail information of GWHGAAZE016319

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664385.1	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9SB51\|UBP16_ARATH	7E-180	Ubiquitin carboxyl-terminal hydrolase 16
trEMBL	tr\|A5B0M8\|A5B0M8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74012.1}
TAIR10	AT4G24560.1	2E-142	ubiquitin-specific protease 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	73542163	73551451	+
GWHAAZE00000004	mRNA	73542163	73551451	+
GWHAAZE00000004	exon	73542163	73542669	+
GWHAAZE00000004	exon	73543838	73544116	+
GWHAAZE00000004	exon	73545375	73546488	+
GWHAAZE00000004	exon	73546597	73546685	+
GWHAAZE00000004	exon	73547490	73547575	+
GWHAAZE00000004	exon	73547661	73547823	+
GWHAAZE00000004	exon	73547924	73548044	+
GWHAAZE00000004	exon	73548154	73548311	+
GWHAAZE00000004	exon	73549755	73549839	+
GWHAAZE00000004	exon	73549938	73550150	+
GWHAAZE00000004	exon	73550712	73550773	+
GWHAAZE00000004	exon	73550866	73551451	+
GWHAAZE00000004	five_prime_UTR	73542163	73542301	+
GWHAAZE00000004	CDS	73542302	73542669	+
GWHAAZE00000004	CDS	73543838	73544116	+
GWHAAZE00000004	CDS	73545375	73546488	+
GWHAAZE00000004	CDS	73546597	73546685	+
GWHAAZE00000004	CDS	73547490	73547575	+
GWHAAZE00000004	CDS	73547661	73547823	+
GWHAAZE00000004	CDS	73547924	73548044	+
GWHAAZE00000004	CDS	73548154	73548311	+
GWHAAZE00000004	CDS	73549755	73549839	+
GWHAAZE00000004	CDS	73549938	73550150	+
GWHAAZE00000004	CDS	73550712	73550773	+
GWHAAZE00000004	CDS	73550866	73551451	+

Transcript Sequence
>GWHTAAZE016339 TACTGTTTTTTGTAGTTTATATTGTTGTTACTATCATCCTGATGGCATAGTAATCGAGTGATTATGGTTGTAGATTGGATCATCTATCATCTATGTATGTGAATTTAGGGTTTCATTTTGGTGGATACTTGTTGTATAAATGCTAATTGGAAGGGATCTAGGGTTTTCGTACTTGGCGGTGGTGATTGTGCTGTTTTGTTCGGTGATCGGTTTCGTTGTCCGCCGGAAATGGCTGAGTGCGATGGCGAGGGCGGAGGAGGTTAAGAGGCTTTTGGTTTTGGCCTCGGAGGAGTCAGCTAGGGTGGAGCTCGAGGCCACCGCCGGTTATAGCACCACCAATTACGACACCGAATCTCAATATTTGAAGTATCAGTGGGCCACCACCGGGTACAGCGATAGCGTATCATCATCATCATCATCGGAATCTCAGAAATTAGGGTTTCAGTGTGCTGTGTGCTTTTGCCCTACCACTAGTCGGTGTGCGCGGTGTAAAGCTGTTCGGTACTGTTGTAGTTTTAGGGCATCACCATGTCAAATTGTGAACAGATGTAGGATGGATGACGAGGAGAAACCTGTGATCATCTCTTTCTCCATCCTCCAGTGGGAAAAGAGCCGTGAGGAGAAAGTTGCCTTCTGGTGCTTTGTGGTTTATGCTAAAGTTGTATGCAACGTTGATTCTTGGGCGGATTCCAGATCAACAGGAAGGCTTGCAAGGTGTGGAATGTTGTCCCTTAGTTTATTTGTTGGTGTGTCAGGAGGGAGAGAAATAGAAGATGCTTTGAAGGGCTCTGGTGAATGTCAAATTATTCATTGGAGACAAGGTCACAAGGACGACTGCCATCCGTTTACAACTATTAAGCAAGGAGAAGATGACAATTACAGCAATACCTTTGAGACTGAGGAGAGGCCTAAACCGGTTGAAATATTACCTGAAGAACCTGCTTTTTCTAGTTCCAGACGGTCCAGTATTCTAGAAAAGAACGATGACATTGGAGTTGAGAATCTTGTAAGCGGAGAAAGTAGAAATTCTGCTTCCAAATTTACATCTCACTCGTTCTGTAAGGAATCTTCTGGATTAAGTGCCCATAGTGAATCATCGTCTGGTGCTGTCAGTAATTCAAATGATTCTAATCATGTTAACACTAATCAAAACAAGCCACTGTTTTCAGAGCACCCCACTTTGGCCACTTCTGTAGATTTTGTTACTCGTTCTGTAGATTCTGTTACTCGTTCAGTGAAGTTAAACCAGACCAAACCGAGTTGTAGTGACAGAGATAGTCAGAGTGGCTCATCTAGTTCATCGGGTTGGAGTGTTGATGGCTCAAACAACTCTACATTTTCGGAGCCTTCTACGCCCTCTTCTGGTTTCTGGGAGGGAACCCTTGATTCTACTTCTGACTCCATTGAAGTTACTCTTCCCCCCACGGATCTACGTCGCTCTAATGTGAAAACAACGACGTTAGAAGATGCGGGTCACACTAATTCGGACATTAAGAAGCCTGTTAAGGAAGCTGGTTCATCGGAAGGATTAAGTAAAAATGATTCCTCATCCAGTGTTTCTGGTTCTCATCCAGTTTCCAGTCCTACAAGACATTCTACAAGGAAAGACATTAAAAAGTTCAGTAGCTTGTTACCCTCCGGCCCTATAAAGTCAAATCGTTTGGTTAGTGACAAGAGCAGCCATTCATGGGTATCGAAACCTCGAGAAGTTGGATCCTTGTCAGCCAAACCATTGGATTCTGAAGATGGCATTCAAGGCATTGCTGCTTGTTCCTCCCAGTTTAATTCAAAAAATGCTGGAAATGGGTTGAAAACATCAATGTGGAAAGTTGTTGATCAGCTCAGAGCATCTAAGTTGTCAAGATTAGGGAGTGCGGTTTCAGGAAGATACAATTACAAGGGTTTGTTTCCTTATGAACTGTTTGTGTATCTTTATAACTGGAAGGAGGTTGAACTGCGTCCATGCGGCCTTATAAATTGTGGGAACAGCTGTTATGCCAATGCTGTGCTCCAATGCTTGGCATTTACGCCGCCTCTTACTGCTTACCTTCTCCAAGGACTCCATTACCAGACATGTGAAAAGAATGACTGGTGCTTCACCTGTGAGTTTGAAAGGCTAATCCTGAGGATGAAGGAGGGGACTTCTCCTCTTTCTCCCGTTAGGATACTATCCCAGATACAAAACATCGGAGGCAATCTTTCTAATGGGAGAGAAGAAGATGCACATGAATTTCTCAGGTATGCGATCGATACTATGCAATCTGTCTGCCTTAAAGAAGCTGGGGCAAATGCATCTGCCTCTTTGGAAGAAGAAACTACTCTCATAGACCTTACCTTTGGGGGTTATCTCCGTTCAAAGATAAGGTGCATGAGGTGTGGAGGAAAATCTGAGAGAAATGAGAGAATGATGGATCTCACTGTGGAGATAGGAGGAGATATAGGAACCCTAGAAGAGGCTCTACGACAGTTTACAGGAACTGAGATTCTGGAGGGCGAAAATAAGTATCAATGCAGCAGATGCAAATCCTATGAGAAGGCCAAGAAGAAGTTGACAGTATTGGAGGCTCCTAACGTCCTTACTATTGCATTGAAGCGATTTCAGTCCGGTAAATTTGGGAAACTCAATAAGTCAATCCGGTTCCCAGAGATTCTTGACCTGGCTCCCTATATGAGTGAGACGAGTGATACGTCCCCAATATACAGGCTTTATGGAGTGGTGGTTCACTTGGATATAATGAATGCTGCCTTTTCTGGTCACTATGTGTGTTATGTTAAAAATATTCAGAACAAGTGGTTTAAGATTGATGACAGTAAGGTAAAACCTGTGGAACTTGAGAGGGTATTGTCAAAAGGGGCATATATGCTACTTTATGCAAGGTGCTCACCACAAGCCCCAAGATCCATACGAAATTCTATCATACCTCGAGATCTGCGAAAAACAAAGAACCCAATATTCAAGCCAAGATCCCACCGGACCAGAGACTTTTACACAGATCCAAGTTCCCAGCCAATCATTGAAGAGGACTCTTCAAGCGAAACCTCTTCCTCCTTTTTCTCAGAGTCCGGTTCTTGCAGTACCGAGACCAGCACCAGGGATTCCACTAGCACCGATGACTATTTTGACCAAATATTAGCCGATTTCGGTCGCATTTGTAACGGCCAATCGGATTCTGACACGTCATCGTCCTCATCCTATCCTTCTCCCTTGTATGAGTACAGGGAATCAGCGGCTGATGATCGCGGTCGTTGGCCCGGAGGGCAACCAATGAGGAGTCACGAAGTGGAAGGCTCGGGAATCGAGGCAAGTGTACCTTTTTCAAATTCGGAAAGGACTAAACATGGTAGGAAGTTAGTTAATAGTAGTTGTAGGGTGACCGAATCGGATAGAATAGGACGGGTCAACCCTTCGAACATTAAATCCGGTGTATCGTTTAGGAGATCAACGAGCGAACGAAGGGACTAA

Network for GWHGAAZE016319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	609	911	3.30E-47

Protein Sequence

>GWHPAAZE016329
MLIGRDLGFSYLAVVIVLFCSVIGFVVRRKWLSAMARAEEVKRLLVLASEESARVELEATAGYSTTNYDTESQYLKYQWATTGYSDSVSSSSSSESQKLGFQCAVCFCPTTSRCARCKAVRYCCSFRASPCQIVNRCRMDDEEKPVIISFSILQWEKSREEKVAFWCFVVYAKVVCNVDSWADSRSTGRLARCGMLSLSLFVGVSGGREIEDALKGSGECQIIHWRQGHKDDCHPFTTIKQGEDDNYSNTFETEERPKPVEILPEEPAFSSSRRSSILEKNDDIGVENLVSGESRNSASKFTSHSFCKESSGLSAHSESSSGAVSNSNDSNHVNTNQNKPLFSEHPTLATSVDFVTRSVDSVTRSVKLNQTKPSCSDRDSQSGSSSSSGWSVDGSNNSTFSEPSTPSSGFWEGTLDSTSDSIEVTLPPTDLRRSNVKTTTLEDAGHTNSDIKKPVKEAGSSEGLSKNDSSSSVSGSHPVSSPTRHSTRKDIKKFSSLLPSGPIKSNRLVSDKSSHSWVSKPREVGSLSAKPLDSEDGIQGIAACSSQFNSKNAGNGLKTSMWKVVDQLRASKLSRLGSAVSGRYNYKGLFPYELFVYLYNWKEVELRPCGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHYQTCEKNDWCFTCEFERLILRMKEGTSPLSPVRILSQIQNIGGNLSNGREEDAHEFLRYAIDTMQSVCLKEAGANASASLEEETTLIDLTFGGYLRSKIRCMRCGGKSERNERMMDLTVEIGGDIGTLEEALRQFTGTEILEGENKYQCSRCKSYEKAKKKLTVLEAPNVLTIALKRFQSGKFGKLNKSIRFPEILDLAPYMSETSDTSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKIDDSKVKPVELERVLSKGAYMLLYARCSPQAPRSIRNSIIPRDLRKTKNPIFKPRSHRTRDFYTDPSSQPIIEEDSSSETSSSFFSESGSCSTETSTRDSTSTDDYFDQILADFGRICNGQSDSDTSSSSSYPSPLYEYRESAADDRGRWPGGQPMRSHEVEGSGIEASVPFSNSERTKHGRKLVNSSCRVTESDRIGRVNPSNIKSGVSFRRSTSERRD

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.340
	SRR3591706	second leaf	17.539
	SRR3591707	mature leaf	20.199
	SRR3591708	Shoot apex	19.274
	SRR3591709	Stem	30.252
	SRR3591710	White floral bud	33.926
	SRR3591711	White flower	41.641
	SRR3591712	Green floral bud	29.898
	SRR3591713	Yellow flower	34.816
SRP173429	SRR8316895	Juvenile bud stage	14.711
	SRR8316896	Juvenile bud stage	18.273
	SRR8316897	Juvenile bud stage	8.745
	SRR8316894	Third green stage	9.432
	SRR8316900	Third green stage	25.864
	SRR8316901	Third green stage	26.298
	SRR8316898	Complete white stage	15.593
	SRR8316899	Complete white stage	48.385
	SRR8316903	Complete white stage	25.115
	SRR8316902	Silver flowering stage	14.450
	SRR8316904	Silver flowering stage	22.074
	SRR8316905	Silver flowering stage	9.237
	SRR8316906	Gold flowering stage	30.210
	SRR8316907	Gold flowering stage	28.608
	SRR8316908	Gold flowering stage	31.365
SRP132670	SRR6706286	Control	22.402
	SRR6706287	Light intensity 50%	23.672
	SRR6706288	Light intensity 20%	24.522
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.984
	CNS0095593	Slightly white alabastrum(diploid) 2	13.519
	CNS0095594	Slightly white alabastrum(diploid) 3	12.031
	CNS0095595	Whole white alabastrum(diploid) 2	13.007
	CNS0095596	Whole white alabastrum(diploid) 3	10.146
	CNS0095597	Whole white alabastrum(diploid) 4	12.456
	CNS0095598	Silvery flower (diploied) 1	19.610
	CNS0095599	Silvery flower (diploied) 2	16.969
	CNS0095600	Silvery flower (diploied) 3	41.872
	CNS0095601	Golden flower (diploid) 1	17.705
	CNS0095602	Golden flower (diploid) 2	36.164
	CNS0095603	Golden flower (diploid) 3	34.247
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.860
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.008
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.529
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.676
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.847
	CNS0095610	Silvery flower (tetraploid) 1	34.566
	CNS0095611	Silvery flower (tetraploid) 2	30.901
	CNS0095612	Silvery flower (tetraploid) 3	25.975
	CNS0095613	Golden flower (tetraploid) 1	17.820
	CNS0095614	Golden flower (tetraploid) 2	29.610
	CNS0095615	Golden flower (tetraploid) 3	31.542
CRA001975	CRR073297	Stem 1	19.857
	CRR073298	Stem 2	18.091
	CRR073299	Stem 3	15.947
	CRR073300	Leaf 1	20.611
	CRR073301	Leaf 2	19.615
	CRR073302	Leaf 3	17.211
	CRR073303	Juvenile bud 1	18.885
	CRR073304	Juvenile bud 2	16.379
	CRR073305	Juvenile bud 3	25.982
	CRR073306	Third green 1	14.853
	CRR073307	Third green 2	10.580
	CRR073308	Third green 3	14.597
	CRR073309	Second white 1	18.277
	CRR073310	Second white 2	17.023
	CRR073311	Second white 3	17.584
	CRR073312	Silver flowering 1	18.252
	CRR073313	Silver flowering 2	17.677
	CRR073314	Silver flowering 3	15.096
	CRR073315	Gold flowering 1	7.492
	CRR073316	Gold flowering 2	12.865
	CRR073317	Gold flowering 3	8.770
	CRR073318	Tawny withering 1	15.260
	CRR073319	Tawny withering 2	16.203
	CRR073320	Tawny withering 3	12.810