Gene detail

Detail information of GWHGAAZE016323

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664405.1	7.0972E-124	PREDICTED: probable ubiquitin-like-specific protease 2B isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8L7S0\|ULP2B_ARATH	1E-68	Probable ubiquitin-like-specific protease 2B
trEMBL	tr\|A0A061FDN9\|A0A061FDN9_THECC	3E-112	Cysteine proteinases superfamily protein, putative {ECO:0000313\|EMBL:EOY15445.1}
TAIR10	AT1G09730.2	4E-59	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	73672595	73685554	+
GWHAAZE00000004	mRNA	73672595	73685554	+
GWHAAZE00000004	exon	73672595	73672730	+
GWHAAZE00000004	exon	73675239	73675564	+
GWHAAZE00000004	exon	73675652	73675739	+
GWHAAZE00000004	exon	73675839	73675879	+
GWHAAZE00000004	exon	73676684	73676881	+
GWHAAZE00000004	exon	73676958	73677033	+
GWHAAZE00000004	exon	73677453	73677609	+
GWHAAZE00000004	exon	73684132	73684263	+
GWHAAZE00000004	exon	73685350	73685554	+
GWHAAZE00000004	CDS	73672595	73672730	+
GWHAAZE00000004	CDS	73675239	73675564	+
GWHAAZE00000004	CDS	73675652	73675739	+
GWHAAZE00000004	CDS	73675839	73675879	+
GWHAAZE00000004	CDS	73676684	73676881	+
GWHAAZE00000004	CDS	73676958	73677033	+
GWHAAZE00000004	CDS	73677453	73677609	+
GWHAAZE00000004	CDS	73684132	73684263	+
GWHAAZE00000004	CDS	73685350	73685554	+

Transcript Sequence
>GWHTAAZE016343 ATGAAGAGTTCTTGTAAAGGTCTCGACGTTTTCGATTTCAAAGACGAGGATGGGATCCCTGAATACGCAGCTGCTGTTTATTCGAGCAAGTTCAAAGCCTCTAACGCTATCGATAAGTATACCTTCCTTGAAAACGTTGCTCAGGGAACAAACATCCCATCGAAAGAGATCGGCAATATACTATGCGTGGATGTTGATGCAATCAACATTGATCACAATGTGGTCAATGGTGTTTCATTTGCGTCTCAGGATGAAGGAGATGATTGTGATGTTAAAAAAATTCCCAGATTAGATGCTGATACAGAAATGAATTCTACAAATTCTGAACAACTTCCTCAAGTTACGCCGACTGAAGTTGAACGAAGAAGTTTCTTCTTTGGAGTGGAAAGCAGTTCCAGTCCTGCAGTGGCTTTACCTAGTGAAAACAAATTAAACTTTTCCCTTTTGGAGTCCCCCTCCAATGATGAGTCAGCGGATGTGGTTTCAAATGCTGATGAAAGCATGAGTGAGAGATCTCTATCCACTTCTTCCTATGTTGCAGAAGATGATGATGGAACATCACCAGATCAGTGCTTTAGCGGTTGGGAAATGGGCGATGGAAATATGACAGTTGTTTTCTGTCCCGATTATATTGTATATCGTGATAGATATTGTACAGATGCTGTGTTAACTTTTTTGAGCAGTTCCATTGAAATCAAGGGCTCAACTGCCTATGAAGACCAAGGAACCTTTGTCTTCCAATGTGGGCTCGATGATATCATGGATATAGAATCTCAATGGTGTCAAAGGATTGAGATGGCCATGGTAAAGATTCGTGTAATTTCAAAAGACGCTGTACAAGATGAAGATGTACATGGCACTTCTGTTGGTTGGATCAGTCTTCTTCTTAATTTTGCCTGTACTATTAATGATACAGGAATTGAGGAATTGAAGTTTGCTGTTGTTGATCCCGATTGGTATACAAAACAGGAAGTTATCACGTCTTGTGAAATGTACAAGGCTTTGTGGACCATTCTGCCAGATTTTGATGAGCCTTTTGAAGATGTTATTTATCCAAAAGGGGATGCTGATGCTGTTTCCATTAGTAAAAGAGATGTTGATCTACTACAACCAGACACATTTGTTAATGATACCATCATTGACTTCTACATGAAATATTTGAAGAATAAAATCCAACTTGATGAGAGGCAAAGATTCCACTTTTTCAACAGTTTCTTCTTTCGGAAACTGGCTGACCTTGACAAAGATCCATCTAGTGTTTTTGATGCAAGGGCTGCTTTTCAGCGTGTTCGTAAATGGACAAGAAAAGTGAATTTATTTGAAAAGGAATATATCTTTATTCCTGTAAATTTTAAGTAA

Network for GWHGAAZE016323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0003
CFinderModule0282

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	374	451	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.368
	SRR3591706	second leaf	8.032
	SRR3591707	mature leaf	10.164
	SRR3591708	Shoot apex	7.929
	SRR3591709	Stem	12.200
	SRR3591710	White floral bud	6.839
	SRR3591711	White flower	7.675
	SRR3591712	Green floral bud	5.653
	SRR3591713	Yellow flower	7.071
SRP173429	SRR8316895	Juvenile bud stage	4.289
	SRR8316896	Juvenile bud stage	4.955
	SRR8316897	Juvenile bud stage	2.242
	SRR8316894	Third green stage	2.829
	SRR8316900	Third green stage	7.919
	SRR8316901	Third green stage	6.465
	SRR8316898	Complete white stage	2.994
	SRR8316899	Complete white stage	8.858
	SRR8316903	Complete white stage	5.704
	SRR8316902	Silver flowering stage	4.506
	SRR8316904	Silver flowering stage	8.528
	SRR8316905	Silver flowering stage	2.201
	SRR8316906	Gold flowering stage	9.363
	SRR8316907	Gold flowering stage	8.269
	SRR8316908	Gold flowering stage	9.461
SRP132670	SRR6706286	Control	1.478
	SRR6706287	Light intensity 50%	1.672
	SRR6706288	Light intensity 20%	2.145
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.622
	CNS0095593	Slightly white alabastrum(diploid) 2	2.443
	CNS0095594	Slightly white alabastrum(diploid) 3	1.842
	CNS0095595	Whole white alabastrum(diploid) 2	2.747
	CNS0095596	Whole white alabastrum(diploid) 3	1.857
	CNS0095597	Whole white alabastrum(diploid) 4	2.001
	CNS0095598	Silvery flower (diploied) 1	5.596
	CNS0095599	Silvery flower (diploied) 2	4.018
	CNS0095600	Silvery flower (diploied) 3	9.400
	CNS0095601	Golden flower (diploid) 1	2.694
	CNS0095602	Golden flower (diploid) 2	10.323
	CNS0095603	Golden flower (diploid) 3	10.494
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.317
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.306
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.350
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.506
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.443
	CNS0095610	Silvery flower (tetraploid) 1	16.317
	CNS0095611	Silvery flower (tetraploid) 2	17.214
	CNS0095612	Silvery flower (tetraploid) 3	12.711
	CNS0095613	Golden flower (tetraploid) 1	7.898
	CNS0095614	Golden flower (tetraploid) 2	15.206
	CNS0095615	Golden flower (tetraploid) 3	20.967
CRA001975	CRR073297	Stem 1	2.585
	CRR073298	Stem 2	2.981
	CRR073299	Stem 3	2.672
	CRR073300	Leaf 1	4.901
	CRR073301	Leaf 2	3.122
	CRR073302	Leaf 3	2.286
	CRR073303	Juvenile bud 1	2.212
	CRR073304	Juvenile bud 2	3.129
	CRR073305	Juvenile bud 3	3.109
	CRR073306	Third green 1	1.209
	CRR073307	Third green 2	1.320
	CRR073308	Third green 3	1.750
	CRR073309	Second white 1	2.276
	CRR073310	Second white 2	2.188
	CRR073311	Second white 3	4.357
	CRR073312	Silver flowering 1	2.723
	CRR073313	Silver flowering 2	2.038
	CRR073314	Silver flowering 3	1.703
	CRR073315	Gold flowering 1	2.161
	CRR073316	Gold flowering 2	3.913
	CRR073317	Gold flowering 3	3.547
	CRR073318	Tawny withering 1	2.323
	CRR073319	Tawny withering 2	2.398
	CRR073320	Tawny withering 3	4.808