Detail information of GWHGAAZE016325


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009624664.10PREDICTED: argininosuccinate lyase, chloroplastic [Nicotiana tomentosiformis]
Swissprottr|Q9LEU8|ARLY_ARATH0Argininosuccinate lyase, chloroplastic (Precursor)
trEMBLtr|M1AJK6|M1AJK6_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024170}
TAIR10AT5G10920.10L-Aspartase-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7372882273735570-
GWHAAZE00000004mRNA7372882273735570-
GWHAAZE00000004exon7372882273729085-
GWHAAZE00000004exon7372955873729734-
GWHAAZE00000004exon7373030773730598-
GWHAAZE00000004exon7373125673731404-
GWHAAZE00000004exon7373250173732617-
GWHAAZE00000004exon7373335573733618-
GWHAAZE00000004exon7373522673735570-
GWHAAZE00000004CDS7373522673735570-
GWHAAZE00000004CDS7373335573733618-
GWHAAZE00000004CDS7373250173732617-
GWHAAZE00000004CDS7373125673731404-
GWHAAZE00000004CDS7373030773730598-
GWHAAZE00000004CDS7372955873729734-
GWHAAZE00000004CDS7372882273729085-
Transcript Sequence

Network for GWHGAAZE016325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00206.21Lyase_1743683.00E-67
PF14698.7ASL_C24335021.50E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01755argH, ASL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220

Gene Ontology

GO term OntologyName
GO:0042450biological_processarginine biosynthetic process via ornithine
GO:0003824molecular_functioncatalytic activity
GO:0004056molecular_functionargininosuccinate lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.733
SRR3591706second leaf10.700
SRR3591707mature leaf10.296
SRR3591708Shoot apex19.656
SRR3591709Stem10.743
SRR3591710White floral bud11.015
SRR3591711White flower14.901
SRR3591712Green floral bud17.600
SRR3591713Yellow flower14.561
SRP173429 SRR8316895Juvenile bud stage 16.233
SRR8316896Juvenile bud stage 23.001
SRR8316897Juvenile bud stage 9.332
SRR8316894Third green stage 6.522
SRR8316900Third green stage 22.788
SRR8316901Third green stage 20.395
SRR8316898Complete white stage 4.005
SRR8316899Complete white stage 18.475
SRR8316903Complete white stage 6.676
SRR8316902Silver flowering stage5.119
SRR8316904Silver flowering stage5.110
SRR8316905Silver flowering stage2.107
SRR8316906Gold flowering stage 10.565
SRR8316907Gold flowering stage 9.650
SRR8316908Gold flowering stage 15.717
SRP132670SRR6706286Control17.080
SRR6706287Light intensity 50%17.978
SRR6706288Light intensity 20%20.393
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.733
CNS0095593Slightly white alabastrum(diploid) 215.208
CNS0095594Slightly white alabastrum(diploid) 316.509
CNS0095595Whole white alabastrum(diploid) 213.377
CNS0095596Whole white alabastrum(diploid) 317.704
CNS0095597Whole white alabastrum(diploid) 411.031
CNS0095598Silvery flower (diploied) 112.966
CNS0095599Silvery flower (diploied) 210.943
CNS0095600Silvery flower (diploied) 312.002
CNS0095601Golden flower (diploid) 17.401
CNS0095602Golden flower (diploid) 211.899
CNS0095603Golden flower (diploid) 311.612
CNS0095604Slightly white alabastrum(tetraploid) 113.971
CNS0095605Slightly white alabastrum(tetraploid) 210.039
CNS0095606Slightly white alabastrum(tetraploid) 317.285
CNS0095607Whole white alabastrum(tetraploid) 18.845
CNS0095608Whole white alabastrum(tetraploid) 27.039
CNS0095609Whole white alabastrum(tetraploid) 314.121
CNS0095610Silvery flower (tetraploid) 116.400
CNS0095611Silvery flower (tetraploid) 217.731
CNS0095612Silvery flower (tetraploid) 311.130
CNS0095613Golden flower (tetraploid) 18.803
CNS0095614Golden flower (tetraploid) 217.007
CNS0095615Golden flower (tetraploid) 316.715
CRA001975CRR073297Stem 124.017
CRR073298Stem 225.031
CRR073299Stem 324.333
CRR073300Leaf 119.307
CRR073301Leaf 220.681
CRR073302Leaf 322.338
CRR073303Juvenile bud 125.216
CRR073304Juvenile bud 215.125
CRR073305Juvenile bud 319.428
CRR073306Third green 11.867
CRR073307Third green 23.219
CRR073308Third green 33.523
CRR073309Second white 15.289
CRR073310Second white 22.351
CRR073311Second white 32.925
CRR073312Silver flowering 11.930
CRR073313Silver flowering 22.854
CRR073314Silver flowering 32.106
CRR073315Gold flowering 116.632
CRR073316Gold flowering 221.556
CRR073317Gold flowering 310.490
CRR073318Tawny withering 113.698
CRR073319Tawny withering 29.040
CRR073320Tawny withering 321.358