Detail information of GWHGAAZE016335


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007018253.10WD40 and Beach domain-containing protein isoform 1 [Theobroma cacao]
trEMBLtr|A0A061FDR7|A0A061FDR7_THECC0WD40 and Beach domain-containing protein isoform 1 {ECO:0000313|EMBL:EOY15480.1}
TAIR10AT1G58230.10binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7394409873975982+
GWHAAZE00000004mRNA7394409873975982+
GWHAAZE00000004exon7394409873944237+
GWHAAZE00000004exon7394436073944592+
GWHAAZE00000004exon7394587073946092+
GWHAAZE00000004exon7394745373947582+
GWHAAZE00000004exon7394856073948996+
GWHAAZE00000004exon7394944473949658+
GWHAAZE00000004exon7395014873950581+
GWHAAZE00000004exon7395072173950876+
GWHAAZE00000004exon7395112473951273+
GWHAAZE00000004exon7395160773951762+
GWHAAZE00000004exon7395190973951950+
GWHAAZE00000004exon7395236273952535+
GWHAAZE00000004exon7395337873953551+
GWHAAZE00000004exon7395365473953814+
GWHAAZE00000004exon7395392473954239+
GWHAAZE00000004exon7395436973954792+
GWHAAZE00000004exon7395517673955512+
GWHAAZE00000004exon7395587073956058+
GWHAAZE00000004exon7396054373960647+
GWHAAZE00000004exon7396113573961396+
GWHAAZE00000004exon7396184773962038+
GWHAAZE00000004exon7396211873962336+
GWHAAZE00000004exon7396321073963386+
GWHAAZE00000004exon7396353673963651+
GWHAAZE00000004exon7396412573964589+
GWHAAZE00000004exon7396639473966607+
GWHAAZE00000004exon7396813773968358+
GWHAAZE00000004exon7396916773969643+
GWHAAZE00000004exon7397002873970369+
GWHAAZE00000004exon7397121873971667+
GWHAAZE00000004exon7397173773971807+
GWHAAZE00000004exon7397235573972448+
GWHAAZE00000004exon7397254973972755+
GWHAAZE00000004exon7397309673973221+
GWHAAZE00000004exon7397337473973688+
GWHAAZE00000004exon7397406273974293+
GWHAAZE00000004exon7397530673975982+
GWHAAZE00000004CDS7394409873944237+
GWHAAZE00000004CDS7394436073944592+
GWHAAZE00000004CDS7394587073946092+
GWHAAZE00000004CDS7394745373947582+
GWHAAZE00000004CDS7394856073948996+
GWHAAZE00000004CDS7394944473949658+
GWHAAZE00000004CDS7395014873950581+
GWHAAZE00000004CDS7395072173950876+
GWHAAZE00000004CDS7395112473951273+
GWHAAZE00000004CDS7395160773951762+
GWHAAZE00000004CDS7395190973951950+
GWHAAZE00000004CDS7395236273952535+
GWHAAZE00000004CDS7395337873953551+
GWHAAZE00000004CDS7395365473953814+
GWHAAZE00000004CDS7395392473954239+
GWHAAZE00000004CDS7395436973954792+
GWHAAZE00000004CDS7395517673955512+
GWHAAZE00000004CDS7395587073956058+
GWHAAZE00000004CDS7396054373960647+
GWHAAZE00000004CDS7396113573961396+
GWHAAZE00000004CDS7396184773962038+
GWHAAZE00000004CDS7396211873962336+
GWHAAZE00000004CDS7396321073963386+
GWHAAZE00000004CDS7396353673963651+
GWHAAZE00000004CDS7396412573964589+
GWHAAZE00000004CDS7396639473966607+
GWHAAZE00000004CDS7396813773968358+
GWHAAZE00000004CDS7396916773969643+
GWHAAZE00000004CDS7397002873970369+
GWHAAZE00000004CDS7397121873971667+
GWHAAZE00000004CDS7397173773971807+
GWHAAZE00000004CDS7397235573972448+
GWHAAZE00000004CDS7397254973972755+
GWHAAZE00000004CDS7397309673973221+
GWHAAZE00000004CDS7397337473973688+
GWHAAZE00000004CDS7397406273974293+
GWHAAZE00000004CDS7397530673975982+
Transcript Sequence

Network for GWHGAAZE016335

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13385.7Laminin_G_38269997.10E-11
PF15787.6DUF4704107013466.40E-84
PF16057.6DUF4800197020741.90E-09
PF14844.7PH_BEACH218723361.80E-12
PF02138.19Beach237626601.30E-117
PF00400.33WD40277728121.90E-05
PF00400.33WD40284128750.015
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.098
SRR3591706second leaf12.632
SRR3591707mature leaf20.502
SRR3591708Shoot apex11.401
SRR3591709Stem26.895
SRR3591710White floral bud21.858
SRR3591711White flower25.360
SRR3591712Green floral bud15.474
SRR3591713Yellow flower20.643
SRP173429 SRR8316895Juvenile bud stage 9.038
SRR8316896Juvenile bud stage 12.139
SRR8316897Juvenile bud stage 6.321
SRR8316894Third green stage 5.938
SRR8316900Third green stage 13.193
SRR8316901Third green stage 13.904
SRR8316898Complete white stage 4.066
SRR8316899Complete white stage 10.794
SRR8316903Complete white stage 16.231
SRR8316902Silver flowering stage7.923
SRR8316904Silver flowering stage15.591
SRR8316905Silver flowering stage6.588
SRR8316906Gold flowering stage 25.355
SRR8316907Gold flowering stage 20.882
SRR8316908Gold flowering stage 19.863
SRP132670SRR6706286Control9.179
SRR6706287Light intensity 50%10.979
SRR6706288Light intensity 20%11.353
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.037
CNS0095593Slightly white alabastrum(diploid) 24.975
CNS0095594Slightly white alabastrum(diploid) 34.344
CNS0095595Whole white alabastrum(diploid) 24.820
CNS0095596Whole white alabastrum(diploid) 33.656
CNS0095597Whole white alabastrum(diploid) 44.992
CNS0095598Silvery flower (diploied) 111.951
CNS0095599Silvery flower (diploied) 28.033
CNS0095600Silvery flower (diploied) 325.010
CNS0095601Golden flower (diploid) 110.121
CNS0095602Golden flower (diploid) 226.394
CNS0095603Golden flower (diploid) 324.785
CNS0095604Slightly white alabastrum(tetraploid) 16.128
CNS0095605Slightly white alabastrum(tetraploid) 24.765
CNS0095606Slightly white alabastrum(tetraploid) 313.776
CNS0095607Whole white alabastrum(tetraploid) 15.464
CNS0095608Whole white alabastrum(tetraploid) 23.520
CNS0095609Whole white alabastrum(tetraploid) 310.213
CNS0095610Silvery flower (tetraploid) 121.787
CNS0095611Silvery flower (tetraploid) 222.423
CNS0095612Silvery flower (tetraploid) 323.313
CNS0095613Golden flower (tetraploid) 112.580
CNS0095614Golden flower (tetraploid) 218.729
CNS0095615Golden flower (tetraploid) 334.954
CRA001975CRR073297Stem 18.854
CRR073298Stem 27.057
CRR073299Stem 33.796
CRR073300Leaf 19.113
CRR073301Leaf 27.283
CRR073302Leaf 33.455
CRR073303Juvenile bud 13.246
CRR073304Juvenile bud 22.617
CRR073305Juvenile bud 36.639
CRR073306Third green 13.896
CRR073307Third green 21.816
CRR073308Third green 34.283
CRR073309Second white 12.069
CRR073310Second white 25.452
CRR073311Second white 37.000
CRR073312Silver flowering 14.534
CRR073313Silver flowering 23.136
CRR073314Silver flowering 33.939
CRR073315Gold flowering 11.168
CRR073316Gold flowering 23.620
CRR073317Gold flowering 31.160
CRR073318Tawny withering 15.134
CRR073319Tawny withering 25.832
CRR073320Tawny withering 33.547