Detail information of GWHGAAZE016336


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010061562.11.94663E-46PREDICTED: GATA transcription factor 25 [Eucalyptus grandis]
Swissprottr|Q9LRH6|GAT25_ARATH1E-29GATA transcription factor 25
trEMBLtr|A0A059BRF6|A0A059BRF6_EUCGR7E-47Uncharacterized protein {ECO:0000313|EMBL:KCW68524.1}
TAIR10AT4G24470.38E-26GATA-type zinc finger protein with TIFY domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7399926374002614+
GWHAAZE00000004mRNA7399926374002614+
GWHAAZE00000004exon7399926373999505+
GWHAAZE00000004exon7400077274000861+
GWHAAZE00000004exon7400095474001087+
GWHAAZE00000004exon7400249574002614+
GWHAAZE00000004CDS7399926373999505+
GWHAAZE00000004CDS7400077274000861+
GWHAAZE00000004CDS7400095474001087+
GWHAAZE00000004CDS7400249574002609+
GWHAAZE00000004three_prime_UTR7400261074002614+
Transcript Sequence

Network for GWHGAAZE016336

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06203.15CCT1251672.90E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.806
SRR3591706second leaf16.321
SRR3591707mature leaf15.941
SRR3591708Shoot apex26.965
SRR3591709Stem17.283
SRR3591710White floral bud15.902
SRR3591711White flower20.497
SRR3591712Green floral bud21.798
SRR3591713Yellow flower8.871
SRP173429 SRR8316895Juvenile bud stage 16.870
SRR8316896Juvenile bud stage 19.262
SRR8316897Juvenile bud stage 9.573
SRR8316894Third green stage 6.830
SRR8316900Third green stage 21.812
SRR8316901Third green stage 19.104
SRR8316898Complete white stage 6.629
SRR8316899Complete white stage 33.952
SRR8316903Complete white stage 8.550
SRR8316902Silver flowering stage5.624
SRR8316904Silver flowering stage8.909
SRR8316905Silver flowering stage4.346
SRR8316906Gold flowering stage 13.311
SRR8316907Gold flowering stage 11.374
SRR8316908Gold flowering stage 11.874
SRP132670SRR6706286Control24.628
SRR6706287Light intensity 50%24.734
SRR6706288Light intensity 20%24.682
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.330
CNS0095593Slightly white alabastrum(diploid) 210.332
CNS0095594Slightly white alabastrum(diploid) 314.356
CNS0095595Whole white alabastrum(diploid) 29.214
CNS0095596Whole white alabastrum(diploid) 38.060
CNS0095597Whole white alabastrum(diploid) 48.441
CNS0095598Silvery flower (diploied) 115.999
CNS0095599Silvery flower (diploied) 211.521
CNS0095600Silvery flower (diploied) 314.022
CNS0095601Golden flower (diploid) 113.745
CNS0095602Golden flower (diploid) 214.576
CNS0095603Golden flower (diploid) 316.263
CNS0095604Slightly white alabastrum(tetraploid) 110.975
CNS0095605Slightly white alabastrum(tetraploid) 213.660
CNS0095606Slightly white alabastrum(tetraploid) 324.972
CNS0095607Whole white alabastrum(tetraploid) 18.365
CNS0095608Whole white alabastrum(tetraploid) 28.013
CNS0095609Whole white alabastrum(tetraploid) 314.583
CNS0095610Silvery flower (tetraploid) 114.202
CNS0095611Silvery flower (tetraploid) 213.089
CNS0095612Silvery flower (tetraploid) 38.693
CNS0095613Golden flower (tetraploid) 16.947
CNS0095614Golden flower (tetraploid) 212.578
CNS0095615Golden flower (tetraploid) 36.349
CRA001975CRR073297Stem 123.795
CRR073298Stem 222.285
CRR073299Stem 325.938
CRR073300Leaf 125.297
CRR073301Leaf 219.568
CRR073302Leaf 322.348
CRR073303Juvenile bud 118.888
CRR073304Juvenile bud 217.316
CRR073305Juvenile bud 319.901
CRR073306Third green 12.046
CRR073307Third green 24.170
CRR073308Third green 32.430
CRR073309Second white 14.660
CRR073310Second white 24.194
CRR073311Second white 32.985
CRR073312Silver flowering 11.940
CRR073313Silver flowering 20.888
CRR073314Silver flowering 33.606
CRR073315Gold flowering 113.460
CRR073316Gold flowering 216.736
CRR073317Gold flowering 312.760
CRR073318Tawny withering 120.774
CRR073319Tawny withering 221.979
CRR073320Tawny withering 323.346