Gene detail

Detail information of GWHGAAZE016346

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAJ96571.1	8.27959E-69	predicted protein [Hordeum vulgare subsp. vulgare]
Swissprot	tr\|Q9M0Y8\|NSF_ARATH	4E-66	Vesicle-fusing ATPase
trEMBL	tr\|F2DNA0\|F2DNA0_HORVD	3E-69	Predicted protein {ECO:0000313\|EMBL:BAJ96571.1}
TAIR10	AT4G04910.1	1E-59	AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74200590	74205083	-
GWHAAZE00000004	mRNA	74200590	74205083	-
GWHAAZE00000004	exon	74200590	74200631	-
GWHAAZE00000004	exon	74200739	74200865	-
GWHAAZE00000004	exon	74200992	74201212	-
GWHAAZE00000004	exon	74201686	74201851	-
GWHAAZE00000004	exon	74201967	74202049	-
GWHAAZE00000004	exon	74202158	74202220	-
GWHAAZE00000004	exon	74202339	74202394	-
GWHAAZE00000004	exon	74202486	74202537	-
GWHAAZE00000004	exon	74202956	74203064	-
GWHAAZE00000004	exon	74203385	74203560	-
GWHAAZE00000004	exon	74204197	74204367	-
GWHAAZE00000004	exon	74204462	74204512	-
GWHAAZE00000004	exon	74205078	74205083	-
GWHAAZE00000004	CDS	74205078	74205083	-
GWHAAZE00000004	CDS	74204462	74204512	-
GWHAAZE00000004	CDS	74204197	74204367	-
GWHAAZE00000004	CDS	74203385	74203560	-
GWHAAZE00000004	CDS	74202956	74203064	-
GWHAAZE00000004	CDS	74202486	74202537	-
GWHAAZE00000004	CDS	74202339	74202394	-
GWHAAZE00000004	CDS	74202158	74202220	-
GWHAAZE00000004	CDS	74201967	74202049	-
GWHAAZE00000004	CDS	74201686	74201851	-
GWHAAZE00000004	CDS	74200992	74201212	-
GWHAAZE00000004	CDS	74200739	74200865	-
GWHAAZE00000004	CDS	74200590	74200631	-

Transcript Sequence
>GWHTAAZE016366 ATGTCAATTACTGCATCCGGGTTTGAGAGGAAATTCATCAAGAGATTCAACAAACAAGTGTTCACTGAGTACCAGAATGTGGTCCTAAGGATTAAGGGTACTGTGTACAAATGCACAATAGCAGATATTTCCTTTTTATCCGCCGGGGTAACTACGTCATTTTTCCACAAGCGAGGGATGGTCTGCAGCACCACTAGGGTTCTTGTGAATCTCTCCAATCCGCACATGGGCAAACATATTACTGGAGCTTACATATATGAAGGTATTTTACGGAAAGATTTGAAAACGAATTCTCTTGAAGAAGAGTTGACGTCACTGGGCATTGCGGGAATGACTTCGCAGCTGACAAACATTCTCAGTCTCGCATTTGGCACCCGAATGATACCACCGTTGATGGCAAAGAGGCTGAAGCTGAAACATGTTAAAGGGATGCTTTTATATGGTCCACCAGGATCGGGGAAAACTCTAATAGCCCGATCCCTATGCAAATTGCTCAATGTTAAAGAGCCAAAGGAAAGCATCAGGGCACTTTTCGACGATGCCATTTTGGATGACAAAAGATATGGATTGCGAAGTGCGCTTCATGTCATTGTTTTTGATGAAATAGATTCAATTGCATCGAGAAGAGGAGGTACCGAAGTAAGCAAGACGTATGACAAAATTGTAAATCAATCGCTGTCAATGATCGATGGTGTCAACGAACTGTCAAATGTTTTTATTATTGGAACCACAAACCGAAAGGAAATCCTTGATGAGGCCCTTCTAAGGCCTGGTAGACTCGAGTTGCACATCGAGGTCAAATACCCTGATGGACAAGGGCTGGCTAAAATCCTTGAAATCTACACTAAGGAGTTTAGGGAAGCTTCCCTCATTGATGATGATGTTGATCTTCAAGAAATTGGTAAATATGAATTCAGGAATTTTGATTATTATTGTATTAATAATGCTCTTCAATGCACGTGTACAGCTCACAGGGCCCACGGAGGTAGCGGTGCTACAATGGCATCAGTAGCACGCTTTGCCTATTTATACGCACTTGAAAAATGCAGACAGACAAGCTTCTTCATCAACCCCACAGAAATGAATTTCAAGCTGAGCATGGATGATTTTATCCATGGATTAGAGACAGCAATGTCGGGGCCGAACCAAACAAGTACTAAAGAGATGCCATCAAGTTCCACTGGAATGGCCAATATTCAGCGTGCTCTAAAAGAACATGGGAAGCTTAAGAAGGAACTTTCTTTTTACAAAGAGGAGAAAAACAAACTTGAGAAGACTGTCGATGCACTTGGCGCAATTGTCAAACTGTTTGAAGGCCTCTGA

Network for GWHGAAZE016346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	144	267	5.00E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06027	NSF, SEC18	Autophagy - yeast	map04138
		Vasopressin-regulated water reabsorption	map04962
		GABAergic synapse	map04727
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.107
	SRR3591706	second leaf	0.057
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.617
	SRR3591709	Stem	0.091
	SRR3591710	White floral bud	1.237
	SRR3591711	White flower	1.130
	SRR3591712	Green floral bud	1.870
	SRR3591713	Yellow flower	0.770
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	1.183
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.067
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.273
SRP132670	SRR6706286	Control	0.032
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.058
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.133
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.002
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.585
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.340
	CNS0095610	Silvery flower (tetraploid) 1	0.399
	CNS0095611	Silvery flower (tetraploid) 2	0.597
	CNS0095612	Silvery flower (tetraploid) 3	1.717
	CNS0095613	Golden flower (tetraploid) 1	0.480
	CNS0095614	Golden flower (tetraploid) 2	0.498
	CNS0095615	Golden flower (tetraploid) 3	0.253
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.003
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.004
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000