Detail information of GWHGAAZE016352


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05917.11.11372E-73unnamed protein product [Coffea canephora]
Swissprottr|Q9M0Y8|NSF_ARATH2E-70Vesicle-fusing ATPase
trEMBLtr|A0A068UCA9|A0A068UCA9_COFCA4E-74Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313|EMBL:CDP05917.1}
TAIR10AT4G04910.13E-62AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7445428674456848-
GWHAAZE00000004mRNA7445428674456848-
GWHAAZE00000004exon7445428674454436-
GWHAAZE00000004exon7445454074454622-
GWHAAZE00000004exon7445471074454772-
GWHAAZE00000004exon7445489174454946-
GWHAAZE00000004exon7445505374455140-
GWHAAZE00000004exon7445530174455412-
GWHAAZE00000004exon7445592174456096-
GWHAAZE00000004exon7445641674456586-
GWHAAZE00000004exon7445668574456735-
GWHAAZE00000004exon7445681974456848-
GWHAAZE00000004CDS7445681974456848-
GWHAAZE00000004CDS7445668574456735-
GWHAAZE00000004CDS7445641674456586-
GWHAAZE00000004CDS7445592174456096-
GWHAAZE00000004CDS7445530174455412-
GWHAAZE00000004CDS7445505374455140-
GWHAAZE00000004CDS7445489174454946-
GWHAAZE00000004CDS7445471074454772-
GWHAAZE00000004CDS7445454074454622-
GWHAAZE00000004CDS7445428674454436-
Transcript Sequence

Network for GWHGAAZE016352

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.30AAA1522877.10E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06027NSF, SEC18 Autophagy - yeast map04138
Vasopressin-regulated water reabsorptionmap04962
GABAergic synapsemap04727
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE016352.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30123456789Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.138
SRR8316897Juvenile bud stage 2.101
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.048
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.444
SRR8316907Gold flowering stage 0.167
SRR8316908Gold flowering stage 7.776
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.026
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.067
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.264
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 12.143
CNS0095605Slightly white alabastrum(tetraploid) 21.263
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 13.495
CNS0095608Whole white alabastrum(tetraploid) 23.745
CNS0095609Whole white alabastrum(tetraploid) 32.552
CNS0095610Silvery flower (tetraploid) 10.040
CNS0095611Silvery flower (tetraploid) 20.016
CNS0095612Silvery flower (tetraploid) 30.808
CNS0095613Golden flower (tetraploid) 10.403
CNS0095614Golden flower (tetraploid) 20.353
CNS0095615Golden flower (tetraploid) 30.012
CRA001975CRR073297Stem 10.135
CRR073298Stem 20.025
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000