Gene detail

Detail information of GWHGAAZE016354

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008455621.1	PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Cucumis melo]
Swissprot	tr\|Q9T074\|PCKA_ARATH	Phosphoenolpyruvate carboxykinase [ATP]
trEMBL	tr\|V4SQN9\|V4SQN9_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR39431.1}
TAIR10	AT4G37870.1	phosphoenolpyruvate carboxykinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74635988	74641612	+
GWHAAZE00000004	mRNA	74635988	74641612	+
GWHAAZE00000004	exon	74635988	74636262	+
GWHAAZE00000004	exon	74636503	74636687	+
GWHAAZE00000004	exon	74637218	74637371	+
GWHAAZE00000004	exon	74637674	74637758	+
GWHAAZE00000004	exon	74639174	74639274	+
GWHAAZE00000004	exon	74639474	74639772	+
GWHAAZE00000004	exon	74639936	74640109	+
GWHAAZE00000004	exon	74640278	74640343	+
GWHAAZE00000004	exon	74640447	74640625	+
GWHAAZE00000004	exon	74640745	74640914	+
GWHAAZE00000004	exon	74641002	74641170	+
GWHAAZE00000004	exon	74641469	74641612	+
GWHAAZE00000004	CDS	74635988	74636262	+
GWHAAZE00000004	CDS	74636503	74636687	+
GWHAAZE00000004	CDS	74637218	74637371	+
GWHAAZE00000004	CDS	74637674	74637758	+
GWHAAZE00000004	CDS	74639174	74639274	+
GWHAAZE00000004	CDS	74639474	74639772	+
GWHAAZE00000004	CDS	74639936	74640109	+
GWHAAZE00000004	CDS	74640278	74640343	+
GWHAAZE00000004	CDS	74640447	74640625	+
GWHAAZE00000004	CDS	74640745	74640914	+
GWHAAZE00000004	CDS	74641002	74641170	+
GWHAAZE00000004	CDS	74641469	74641612	+

Transcript Sequence
>GWHTAAZE016374 ATGGCGACAAACGGAACAGAGAACGGGGAATTCAGCTTCGCAAGCGCTGGTGCAAAAGGGAGGAAAGGGCTGGCGAAGATACAGACGAACCAGAAGAAGGATAACGAGATGTGTCACGACGACAGCGTGCCGACGGTGAAGGCTCAGACAATCGATGAGTTGCATTCTCTTCAGCAGAAGAGATCGGCGCCCACTACGCCGATCAAAGGTACTGAGGGCGCCTTTGCCGCCATTTCTGAAGAGGATCGACAGAAACAGCAGCTCCAGTCCATCAGTGCATCGTTGGCATCATTGACTCGGGAGACGGGGCCAAAGGTGGTGAAAGGAGATCCGGCTAGGAAGGCTGAAACTCCGAAACTCTCATCACATGACGTCACTCACCATTATACAGCACCCACTTTCAGTACCAGCGACAGTTCCCTCAAGTTCACCCACATCCTCTACAATCTCTCTCCTGCTGAGTTGTATGAGCAAGCCATAAAGTATGAGAAAGGATCATTCATAACAGCCAGTGGCGCGTTGGCCACACTCTCCGGTGCAAAGACAGGTCGCTCGCCAAGGGACAAGCGCGTCGTAAAGGATGAGACCACCGCAGATGAGCTTTGGTGGGGAAAGGGATCACCCAACATTGAGATGGATGAACACACTTTCTTGGTCAACCGAGAAAGAGCTGTCGATTACTTGTGCTCTTTGGAAAAGGTTTATGTGAACGACCAGTTCCTCAATTGGGACCCAAATCACCGTATCAAGGTCCGAATTGTATCTGCTAGAGCTTACCACTCCTTGTTCATGCACAACATGTGTATCCGACCCACACCCGAAGAGCTGGAGAATTTTGGTACTCCGGACTTCACAATATACAATGCAGGCCAATTCCCATGTAACCGTTACACCCATTATATGACTTCTTCGACTAGCATAGACCTCAATCTTGCTAGGCGAGAAATGGTAATCCTTGGCACCCAATATGCCGGGGAAATGAAGAAAGGCCTCTTCGGCGTAATGCACTATCTCATGCCTAAGCGCCAAATCCTCTCCCTTCACTCTGGCTGCAATATGGGCAAAGAAGGCGATGTCGCTCTCTTCTTTGGATTATCAGGTACCGGGAAGACAACGTTGTCTACAGATCATAATAGGTATCTGATTGGAGATGATGAGCATTGTTGGAGTGAAAATGGCGTGTCAAACATCGAAGGAGGTTGTTACGCGAAGTGTGTTGATTTGGCGAGGGAGAAGGAGCCTGATATTTGGAATGCCATTAAATTTGGGACAGTGTTGGAAAATGTAGTGTTCGATGAACACACACGGGATGTGGATTACTCAGACAAATCTGTAACGGAGAACACCCGGGCAGCATATCCGATAGAGTACATTCCCAACGCTAAGATACCGTGTGTGGGTCCACATCCCAAGAACGTCATCCTTCTTGCCTGTGATGCTTTTGGCGTGCTCCCACCAGTTAGCAAGCTGAGCCTGGCACAAACCATGTACCACTTCATCAGCGGCTATACTGCTCTGGTGGCGGGAACTGAGGATGGTATAAAGGAGCCACAGGCAACATTCTCGGCCTGTTTTGGTGCAGCATTTATAATGCTTCATCCGACTAAGTATGCGGCCATGTTGGCTGAGAAAATGCAGAAGCATGGAGCAACTGGATGGCTTGTTAACACTGGTTGGTCAGGTGGCAGATATGGATCAGGTAGTCGTATCAAGTTAGCATACACTCGGAAGATTATCGATTCCATACACTCGGGTTCACTTCTTCAAGCAAACTACAAAAAGACTGAAGTGTTTGGCCTTGAAATCCCCACTGAAATCGAGGGTGTCCCTTCCGAAATATTGGATCCTGTAAACACCTGGTCCGACAAGAAGGCGTACAAAGACTCGTTGTTGAAGTTGGGAGGTTTGTTCAGGAAGAACTTTGAGGTATTCCAAAACTACAAGATTGGTACAGACAACAAGCTGACTGAGGAGATTGTATCAGCTGGTCCAAATTTCTAA

Network for GWHGAAZE016354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01293.21	PEPCK_ATP	145	612	2.40E-212

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01610	E4.1.1.49, pckA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0006094	biological_process	gluconeogenesis
GO:0004611	molecular_function	phosphoenolpyruvate carboxykinase activity
GO:0017076	molecular_function	purine nucleotide binding
GO:0004612	molecular_function	phosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.077
	SRR3591706	second leaf	19.911
	SRR3591707	mature leaf	21.748
	SRR3591708	Shoot apex	5.931
	SRR3591709	Stem	35.139
	SRR3591710	White floral bud	46.021
	SRR3591711	White flower	21.269
	SRR3591712	Green floral bud	17.651
	SRR3591713	Yellow flower	65.185
SRP173429	SRR8316895	Juvenile bud stage	35.739
	SRR8316896	Juvenile bud stage	90.094
	SRR8316897	Juvenile bud stage	38.798
	SRR8316894	Third green stage	24.620
	SRR8316900	Third green stage	35.371
	SRR8316901	Third green stage	48.829
	SRR8316898	Complete white stage	31.938
	SRR8316899	Complete white stage	5.501
	SRR8316903	Complete white stage	85.911
	SRR8316902	Silver flowering stage	81.058
	SRR8316904	Silver flowering stage	111.492
	SRR8316905	Silver flowering stage	23.157
	SRR8316906	Gold flowering stage	104.619
	SRR8316907	Gold flowering stage	106.572
	SRR8316908	Gold flowering stage	69.284
SRP132670	SRR6706286	Control	57.186
	SRR6706287	Light intensity 50%	54.500
	SRR6706288	Light intensity 20%	37.086
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.127
	CNS0095593	Slightly white alabastrum(diploid) 2	17.937
	CNS0095594	Slightly white alabastrum(diploid) 3	41.646
	CNS0095595	Whole white alabastrum(diploid) 2	18.310
	CNS0095596	Whole white alabastrum(diploid) 3	21.466
	CNS0095597	Whole white alabastrum(diploid) 4	14.872
	CNS0095598	Silvery flower (diploied) 1	21.486
	CNS0095599	Silvery flower (diploied) 2	18.569
	CNS0095600	Silvery flower (diploied) 3	62.181
	CNS0095601	Golden flower (diploid) 1	23.491
	CNS0095602	Golden flower (diploid) 2	91.963
	CNS0095603	Golden flower (diploid) 3	88.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.032
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.345
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.572
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.940
	CNS0095610	Silvery flower (tetraploid) 1	40.099
	CNS0095611	Silvery flower (tetraploid) 2	23.481
	CNS0095612	Silvery flower (tetraploid) 3	82.983
	CNS0095613	Golden flower (tetraploid) 1	167.537
	CNS0095614	Golden flower (tetraploid) 2	107.683
	CNS0095615	Golden flower (tetraploid) 3	228.306
CRA001975	CRR073297	Stem 1	56.181
	CRR073298	Stem 2	63.186
	CRR073299	Stem 3	67.715
	CRR073300	Leaf 1	14.948
	CRR073301	Leaf 2	22.764
	CRR073302	Leaf 3	18.913
	CRR073303	Juvenile bud 1	6.392
	CRR073304	Juvenile bud 2	10.980
	CRR073305	Juvenile bud 3	2.801
	CRR073306	Third green 1	90.284
	CRR073307	Third green 2	139.533
	CRR073308	Third green 3	121.894
	CRR073309	Second white 1	125.392
	CRR073310	Second white 2	102.754
	CRR073311	Second white 3	203.346
	CRR073312	Silver flowering 1	300.020
	CRR073313	Silver flowering 2	233.914
	CRR073314	Silver flowering 3	236.843
	CRR073315	Gold flowering 1	31.448
	CRR073316	Gold flowering 2	44.923
	CRR073317	Gold flowering 3	42.614
	CRR073318	Tawny withering 1	24.985
	CRR073319	Tawny withering 2	50.113
	CRR073320	Tawny withering 3	23.352