Gene detail

Detail information of GWHGAAZE016355

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009591322.1	PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LJM4\|IKU2_ARATH	Receptor-like protein kinase HAIKU2 (Precursor)
trEMBL	tr\|V4T676\|V4T676_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR46950.1}
TAIR10	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74665105	74668328	+
GWHAAZE00000004	mRNA	74665105	74668328	+
GWHAAZE00000004	exon	74665105	74667673	+
GWHAAZE00000004	exon	74667940	74668328	+
GWHAAZE00000004	CDS	74665105	74667673	+
GWHAAZE00000004	CDS	74667940	74668328	+

Transcript Sequence
>GWHTAAZE016375 ATGCCGCCGGCAAAAACTTCCGGTTATCTCCTTCACTTTCTCTCTCTATTCTCTCTCCTCTCCCTATTCTGTCCCGCCTATTCCGAGGAACTCCAAATCCTCCTAAACATCAAAACCGCCTTCCAAAATTCCAACACCAAAGCACTATTCAATTCATGGAATTCAAATACCTCTATATGTAACTTCTCCGGCATCACCTGCAACTCCGAAGGAACTGTAAAAGAAATCAATCTCTCAAGCCGTAATCTCACCGGCGAAGTTCCTTTCGATTCTGTTTGCCAGCTCAAAACACTAGAAAAACTCGCACTAGGCGATAATTCATTATCCGGCAAAGTTACTGAGGATTTGAACAAGTGTGTTCGATTGAATTACTTGGATCTAGGTCACAATATCTTCTCCGGTGAGTTTCCGGATATTTCTTCGCTCAACGGATTAATGTTCTTATATTTGAATCGCAGCGGAATTTCAGGTACTTTTCCGTGGAATTCGCTTTCGAATATGACGAATATGACCGTATGTAGCTTAGGAGATAATGAGTTTCATCCAACTCCATTTCCTAAAGAGATAACAAAGCTTGGGAAACTTAATTGGCTTTATTTAACTAATTGTAGCATTGAAGGTAAAATTCCGCCGGAGATTGGGAATTTGACGGAGCTGATTAATTTAGAGCTCTCAACTAATCGTATCTCCGGTGAGATTCCACCGGAGATTGTGAAGCTTAGTAAGCTATGGCAGCTTGAATTATACGAAAACGAATTGACCGGTAAAATTCCGTTAGGCTTTAGGAATTTGACTAGTCTGGAGAATTTTGATGCTTCTGTTAATCATATTGAAGGTGATCTTTCGGAGCTCAGATTTTCGAATAAGCTTGTGAGTTTACAGTTATTAGAGAATGAGTTAACCGGCGAAATTCCGGAGGAATTTGGGGAATTTAAGCGGCTTGAAGGCTTGTCTTTGTATAGAAACAAGCTAACAGGCTCGCTTCCTCAGAAGCTCGGCTCCTGGTCGAACTTCGTCTTCATCGACGTGGCCGAGAATTTTCTCTCAGGTCAAATTCCGCCGGAGATGTGCAAGATGGGGACTATGAGAGAGCTGCTGATTCTAGATAATAGATTTACAGGTGAAATTCCAGCGAGTTATGCTAATTGTATTACGCTAGAGCGTTTTCGAGTTAGCAATAATTCGCTTTCTGGAGTGGTACATAGTGGTATTTGGGGGTTACCCAATTTGAATTATTTGGATATTGCGTTCAATGAACTCGAAGGTTCGATTACATCGGATGTGAAAAATGCCTTGTCATTGGCTCAGATTATGGTAGCTAAGAATCGATTATCCGGTGAGTTACCACCGGAGATATCAAATGTAGCTTCGTTGGTTTCGGTTGATTTGAGTTATAATATGTTTTCTGGGGAAATTCCGGTGACAATTGGGGGACTTAAACAACTAAGCAGCCTGCATTTAGAACACAACTTGTTCACCGGTGTAATTCCAGTCTCGTTAGGTTCTTGTGAGTCTCTTAGTGATGTAAACATGGCATACAATTCACTTTCAGGCGAGATTCCGGAGACTCTCGGATCCTTGCCGGCTCTCAACTCCTTGAATTTGTCAGCGAATCAACTCTCAGGTCGAATTCCAGGGAGTTTGTCATCTTTGAGACTAAGTATCTTTGATATATCGAACAACAAATTGACCGGTCCGATACCGGAATCTCTCTCTGTTGAGGCCTATAACGGTAGCTTTGCCGGCAACAACGGACTTTGCAGCCAGAAAATCAAATATTTCCAGCGGTGTTTGTCGGATTCCGGCAAGTCCCACGACCTCCACACCCTCATCGCTTGCATTGCAGTTGGTTCAATTGTGATTATAGTCTCAATAACATTCTTCTTGCACTTAAAGAAGAGTCACCAAAAAGACCGAGAGAGATCCCTTAAAGAAGATTCATGGAATGTGAAATCATTTCATGTATTGAGTTTCACTGAAGATGAAATCCTTGATTCAATCAAGCAAGATAATCTAATCGGGAAAGGCGGTTCAGGCAACGTATACAAAGTCTCCACTCATCATGGTATTGATTTGGCCGTGAAGCACATTTGGAACTCAGATTCCGGTGACAGGAAAATGACCCGGAGTACATCTCCGATGCTTTCAAAAAACAGGCAAAAATCTTCACGAGAATTTGATGCAGAGGTAAAAACATTGAGCTCGATTCGACACATTAATGTGGTGAAGTTGTATTGTAGTATCACAAGTGAAGATTCGAGCTTATTGGTATACGAATATATGCCGAATGGGAGCTTGTGGGATCGATTGCATAGTTGTAGAAAAACGATGCTTGATTGGGAGACGCGATACGAGATAGCTCTGGGTGCTGCACGTGGGTTGGGGTATCTTCATCACAGCCTCGAAAAGCCAGTGATTCATAGGGATGTTAAGTCTAGTAACATTTTGTTGGATGAGTTTTTGAAGCCAAGAATTGCAGATTTTGGGCTTGCAAAGATTGTGCAGGCTAGTAATACAAACAAGGATTCAGCTCATGTTATTGCTGGCACACATGGGTATATTGCTCCTGAATATGGATACACGTTCAAAGTGAATGAGAAGAGTGATGTGTACAGCTTTGGAGTGGTTCTAATGGAGCTTGTGGCCGGAAAGAGGCCAATCGAGGCTGAGTATGGAGAGAACAAAGACATAGTGAGTTGGGTAAGCAGCAATCTGAAAAACAAAGCGACTATTTTGAGCATGGTTGACTCGAGTATTTCGGAAGGTTACAAAGAGGAGGCCATCAAGGTTTTGAAGATAGCTATTATGTGTACAGCGAGGATTCCAACGCTCAGGCCAACCATGAGAACCGTGGTTCAAATGCTAGAGGACGCCGAGCCTTGTAAATTAGTTGGCATCACCGTTAATAAAGACAGTGGCGATAAGAAAGAGAAATTGGGGTTTAAGGAGAAAATTTGA

Network for GWHGAAZE016355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	68	4.70E-08
PF13855.7	LRR_8	481	540	1.20E-07
PF00069.26	Pkinase	669	953	3.80E-43

Protein Sequence

>GWHPAAZE016365
MPPAKTSGYLLHFLSLFSLLSLFCPAYSEELQILLNIKTAFQNSNTKALFNSWNSNTSICNFSGITCNSEGTVKEINLSSRNLTGEVPFDSVCQLKTLEKLALGDNSLSGKVTEDLNKCVRLNYLDLGHNIFSGEFPDISSLNGLMFLYLNRSGISGTFPWNSLSNMTNMTVCSLGDNEFHPTPFPKEITKLGKLNWLYLTNCSIEGKIPPEIGNLTELINLELSTNRISGEIPPEIVKLSKLWQLELYENELTGKIPLGFRNLTSLENFDASVNHIEGDLSELRFSNKLVSLQLLENELTGEIPEEFGEFKRLEGLSLYRNKLTGSLPQKLGSWSNFVFIDVAENFLSGQIPPEMCKMGTMRELLILDNRFTGEIPASYANCITLERFRVSNNSLSGVVHSGIWGLPNLNYLDIAFNELEGSITSDVKNALSLAQIMVAKNRLSGELPPEISNVASLVSVDLSYNMFSGEIPVTIGGLKQLSSLHLEHNLFTGVIPVSLGSCESLSDVNMAYNSLSGEIPETLGSLPALNSLNLSANQLSGRIPGSLSSLRLSIFDISNNKLTGPIPESLSVEAYNGSFAGNNGLCSQKIKYFQRCLSDSGKSHDLHTLIACIAVGSIVIIVSITFFLHLKKSHQKDRERSLKEDSWNVKSFHVLSFTEDEILDSIKQDNLIGKGGSGNVYKVSTHHGIDLAVKHIWNSDSGDRKMTRSTSPMLSKNRQKSSREFDAEVKTLSSIRHINVVKLYCSITSEDSSLLVYEYMPNGSLWDRLHSCRKTMLDWETRYEIALGAARGLGYLHHSLEKPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQASNTNKDSAHVIAGTHGYIAPEYGYTFKVNEKSDVYSFGVVLMELVAGKRPIEAEYGENKDIVSWVSSNLKNKATILSMVDSSISEGYKEEAIKVLKIAIMCTARIPTLRPTMRTVVQMLEDAEPCKLVGITVNKDSGDKKEKLGFKEKI

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.004
	SRR3591706	second leaf	6.769
	SRR3591707	mature leaf	22.602
	SRR3591708	Shoot apex	4.088
	SRR3591709	Stem	36.145
	SRR3591710	White floral bud	13.995
	SRR3591711	White flower	58.417
	SRR3591712	Green floral bud	5.520
	SRR3591713	Yellow flower	40.419
SRP173429	SRR8316895	Juvenile bud stage	5.610
	SRR8316896	Juvenile bud stage	6.740
	SRR8316897	Juvenile bud stage	4.911
	SRR8316894	Third green stage	2.213
	SRR8316900	Third green stage	4.378
	SRR8316901	Third green stage	4.781
	SRR8316898	Complete white stage	2.465
	SRR8316899	Complete white stage	7.134
	SRR8316903	Complete white stage	5.011
	SRR8316902	Silver flowering stage	16.694
	SRR8316904	Silver flowering stage	24.031
	SRR8316905	Silver flowering stage	11.102
	SRR8316906	Gold flowering stage	45.204
	SRR8316907	Gold flowering stage	37.460
	SRR8316908	Gold flowering stage	43.756
SRP132670	SRR6706286	Control	6.281
	SRR6706287	Light intensity 50%	6.861
	SRR6706288	Light intensity 20%	6.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.874
	CNS0095593	Slightly white alabastrum(diploid) 2	4.048
	CNS0095594	Slightly white alabastrum(diploid) 3	7.627
	CNS0095595	Whole white alabastrum(diploid) 2	4.616
	CNS0095596	Whole white alabastrum(diploid) 3	1.303
	CNS0095597	Whole white alabastrum(diploid) 4	4.653
	CNS0095598	Silvery flower (diploied) 1	15.803
	CNS0095599	Silvery flower (diploied) 2	11.174
	CNS0095600	Silvery flower (diploied) 3	31.616
	CNS0095601	Golden flower (diploid) 1	13.858
	CNS0095602	Golden flower (diploid) 2	37.871
	CNS0095603	Golden flower (diploid) 3	37.152
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.151
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.331
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.735
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.987
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.682
	CNS0095610	Silvery flower (tetraploid) 1	27.346
	CNS0095611	Silvery flower (tetraploid) 2	22.637
	CNS0095612	Silvery flower (tetraploid) 3	30.359
	CNS0095613	Golden flower (tetraploid) 1	10.627
	CNS0095614	Golden flower (tetraploid) 2	21.649
	CNS0095615	Golden flower (tetraploid) 3	24.795
CRA001975	CRR073297	Stem 1	9.908
	CRR073298	Stem 2	8.040
	CRR073299	Stem 3	8.256
	CRR073300	Leaf 1	6.628
	CRR073301	Leaf 2	5.132
	CRR073302	Leaf 3	5.170
	CRR073303	Juvenile bud 1	4.488
	CRR073304	Juvenile bud 2	4.513
	CRR073305	Juvenile bud 3	5.804
	CRR073306	Third green 1	14.117
	CRR073307	Third green 2	8.034
	CRR073308	Third green 3	12.219
	CRR073309	Second white 1	30.055
	CRR073310	Second white 2	32.180
	CRR073311	Second white 3	37.042
	CRR073312	Silver flowering 1	34.775
	CRR073313	Silver flowering 2	31.250
	CRR073314	Silver flowering 3	29.533
	CRR073315	Gold flowering 1	10.936
	CRR073316	Gold flowering 2	25.425
	CRR073317	Gold flowering 3	13.450
	CRR073318	Tawny withering 1	21.846
	CRR073319	Tawny withering 2	53.061
	CRR073320	Tawny withering 3	16.235