Gene detail

Detail information of GWHGAAZE016369

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002301137.2	3.8954E-137	hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
Swissprot	tr\|Q9M2Y9\|RAX3_ARATH	5E-85	Transcription factor RAX3
trEMBL	tr\|B9GNK5\|B9GNK5_POPTR	1E-137	Uncharacterized protein {ECO:0000313\|EMBL:EEE80410.2}
TAIR10	AT3G49690.1	1E-66	myb domain protein 84

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	75057322	75058861	+
GWHAAZE00000004	mRNA	75057322	75058861	+
GWHAAZE00000004	exon	75057322	75057457	+
GWHAAZE00000004	exon	75057610	75057739	+
GWHAAZE00000004	exon	75058111	75058706	+
GWHAAZE00000004	exon	75058794	75058861	+
GWHAAZE00000004	CDS	75057322	75057457	+
GWHAAZE00000004	CDS	75057610	75057739	+
GWHAAZE00000004	CDS	75058111	75058706	+
GWHAAZE00000004	CDS	75058794	75058861	+

Transcript Sequence
>GWHTAAZE016389 ATGGGGAGAGCTCCTTGTTGTGACAAAGCCAATGTGAAGAAAGGGCCATGGTCACCGGAGGAAGATGCTAAGCTCAAGTCATATATAGAGAAAAATGGCACTGGTGGGAATTGGATTGCTTTGCCTCAAAAGATTGGGCTTAAGAGATGTGGGAAGAGTTGTAGGCTAAGGTGGTTAAATTATCTTCGTCCAAATATCAAGCACGGAGGATTTTCTGAGGAAGAAGATAACATCATTTGCAGCCTTTATATAAGCATAGGAAGCAGGTGGTCTATAATTGCGGCACAATTACCGGGAAGAACAGATAATGATATAAAGAACTACTGGAACACAAGGCTCAAGAAGAAACTCTTAGGTAAGCAGCGAAAAGAAGCACAAGCGCGTAGAGGCAACAACACCCAAAAGCAAGAAATGAAGAGAGGAAGGGGGAAAACCTCAATCACTTTCGATAATCACAACCAAACCCCATATTGGCCAGAGCCTCCTTTGATGCCAAACATATCATACTCAAACCAAGAACTCCACTTCAATGACCAAGCGTCTATTAGGAAATTGCTCATCAAACTTGGAGGGAAATTTTCTACTAATGATCAACTGATCAATGGTGAAACAAATCTTCAATTTCCTATGGAAATTCCTTCATACCAACACTCCATCAATAGTACTGTTTGTGAGTCTGCAAATTTGCAAAATACGCAGTACGGTATTGATGCAACAGGTATGCCTTTAATATTGCAAGGGGGAAGTAGCTTTTCAAATGATCAATTTGAAGAAATGGTTTATAACAACCCACAAAGATTAAATGGGCTTGAGTTCTTATATGAAGAGATGATGAATAATAGAAATGGAAACAGTGTTCTAGGTAATCTTCAAGAAGGTACTCTCCAAGAATGTGGTTTTGAGGGCTTGAGGTATCACGGCACGCAATGA

Network for GWHGAAZE016369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	62	1.70E-13
PF00249.32	Myb_DNA-binding	69	111	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.378
	SRR3591706	second leaf	0.225
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	0.390
	SRR3591709	Stem	0.177
	SRR3591710	White floral bud	0.108
	SRR3591711	White flower	0.264
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.001
SRP173429	SRR8316895	Juvenile bud stage	0.434
	SRR8316896	Juvenile bud stage	0.157
	SRR8316897	Juvenile bud stage	0.212
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.120
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.088
	SRR8316899	Complete white stage	0.363
	SRR8316903	Complete white stage	0.053
	SRR8316902	Silver flowering stage	0.172
	SRR8316904	Silver flowering stage	0.194
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.249
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.570
SRP132670	SRR6706286	Control	0.028
	SRR6706287	Light intensity 50%	0.178
	SRR6706288	Light intensity 20%	0.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.626
	CNS0095595	Whole white alabastrum(diploid) 2	0.155
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.017
	CNS0095598	Silvery flower (diploied) 1	0.562
	CNS0095599	Silvery flower (diploied) 2	0.136
	CNS0095600	Silvery flower (diploied) 3	0.234
	CNS0095601	Golden flower (diploid) 1	0.520
	CNS0095602	Golden flower (diploid) 2	0.459
	CNS0095603	Golden flower (diploid) 3	0.280
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.396
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.195
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.085
	CNS0095610	Silvery flower (tetraploid) 1	0.544
	CNS0095611	Silvery flower (tetraploid) 2	0.126
	CNS0095612	Silvery flower (tetraploid) 3	0.186
	CNS0095613	Golden flower (tetraploid) 1	0.577
	CNS0095614	Golden flower (tetraploid) 2	0.468
	CNS0095615	Golden flower (tetraploid) 3	0.654
CRA001975	CRR073297	Stem 1	0.357
	CRR073298	Stem 2	0.666
	CRR073299	Stem 3	0.826
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.124
	CRR073303	Juvenile bud 1	0.115
	CRR073304	Juvenile bud 2	0.053
	CRR073305	Juvenile bud 3	0.046
	CRR073306	Third green 1	0.001
	CRR073307	Third green 2	0.172
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.003
	CRR073311	Second white 3	0.022
	CRR073312	Silver flowering 1	0.204
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.018
	CRR073318	Tawny withering 1	6.178
	CRR073319	Tawny withering 2	3.494
	CRR073320	Tawny withering 3	6.220