Gene detail

Detail information of GWHGAAZE016379

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007018432.1	0	Growth-regulating factor 1 [Theobroma cacao]
Swissprot	tr\|Q6AWY3\|GRF6_ORYSJ	2E-103	Growth-regulating factor 6
trEMBL	tr\|A0A061FG66\|A0A061FG66_THECC	0	Growth-regulating factor 1 {ECO:0000313\|EMBL:EOY15657.1}
TAIR10	AT2G22840.1	3E-62	growth-regulating factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	75305694	75309300	+
GWHAAZE00000004	mRNA	75305694	75309300	+
GWHAAZE00000004	exon	75305694	75305967	+
GWHAAZE00000004	exon	75306633	75306920	+
GWHAAZE00000004	exon	75307802	75308147	+
GWHAAZE00000004	exon	75308496	75309300	+
GWHAAZE00000004	CDS	75305694	75305967	+
GWHAAZE00000004	CDS	75306633	75306920	+
GWHAAZE00000004	CDS	75307802	75308147	+
GWHAAZE00000004	CDS	75308496	75309300	+

Transcript Sequence
>GWHTAAZE016399 ATGGATTTTGATGGCTTGGTTAGTTCTTACGGATCTGGGTTAAGGCCAGTGGGTTGTGAAGATGATTTGAGGGACTTTAAAGTTGCCAAAATTGATGATGAAAATGGCTTCTCTGTATCCAAGGCAATGCAACAAAGGAGTCCTTTGTTGAGATCTAATACTTCTCTTCTCTCTGATGGCCAACAAATGCTTAGTTTCTCTTCTCCCAACACTCAGGCTCTCACCTTTCCTTACTATTATCACCACACTACTCCCTCTTATGGTAGAAATACAGGTTATGGGTCTGGTGGGGGTTTGAATAATACAGCAGCAGCAGCAGCAAACATGCATGGGGTACTAACAGGTGTTAGAGGCCCATTCACTCCATCACAGTGGATGGAGCTTGAACACCAGGCCTTGATCTACAAGTATATTACCGCAAATGCCCCTATTCCTTCTAATCTACTCATTCCCATCAGAAAAGCACTTGAATCTGCTGGTCTTTCTGCCTTTTCTGGAGGGTATTTAAGGCACAATGCTTGTAAGTTTTTTCTTTCTTTATGCCTTTCTTCTTTGATCAGAATGGGGTGGGGTGGCTATCCTTTGGGATTCTCCAACAGCACGGACCCTGAGCCTGGGAGGTGCCGCCGGACTGACGGGAAGAAATGGCGGTGCTCGAGGGACGCAGTTCCTGAGCAGAAGTACTGTGAACGTCACATGAACAGAGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAGTGGCCATTCCGTCTCCGGACCCACCAACGCCAAGAATATGCCGGCGACGAGGGTGGCGGCCGGGAGCGGCATATCCAGCGGCATTGGTGTCTCGCATCAACAACTCAGTAACTTGCAGCAGCCTACTGGTGCAGCTAATCCTTCTGCTTCCCCTCGCCTTAACAGGGGTTTTCTGAACAAAGCAAATGCGAGTGAGAAAATTCAAGAATCAACAGCAGGCCTCTCCATGGAAAACAATTTCTCCCTCCCCAAACACCAGAACCCGTACGAAGAAGAATCCTCCCGAATGGAATTCGGACTTGTTTGTTCCGACTCACTCCTCAACCCTCTCCACAAAACCTCTCCACTCATAAACTGCAGAAATGAAATCAACGACTCGGAAACCAAATCTCAACAACATTCCCTCCGCCAATTCATGGACGATTTTCCCAAGAATCAGTCCAAACACACCCCCATTTTCTGGACTGACACGCAATCCGAGAGAACCCAGCTCTCCATTTCAATCCCCAATGACTTCATGTCCTCCAGTTCATCACCCACTAATGAGAAACTTGCCCTTTCGCCCTTGAGATTATCCCGCGAGCTTGAATCTACCCAAATGGGCTTGGGTATGGGAGTTGGTCCCACTGGCCTAGACGAGCCAAGCCAGAGGGAAGCTCAATGGGTGCCCATTTCTTGGGGAAATTCAATGGGTGGACCTCTCGGGGAAGTTTTGCACAGTACTAATAACAGTTTAGGGGAGTGTAGCAACGCATCGGCTCTTAACCTTATGACTGAGGGGTGGGACCGTAGCCCTCCGGTAGGGTCCTCACCGACTGGGGTCTTACAAAAGACTACATTTAGGTCACTTTCTAACAGCAGTGCTGGGAGCAGCCCACGAACAGAGCATAACAAAGGACACGAAGGAGTTAGCATTTGCAATAATCTCCTCGGCTCGGCTCTCATCAACTCTACCATGCCCGCCTTGTAA

Network for GWHGAAZE016379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	119	153	7.70E-16
PF08879.11	WRC	203	245	5.70E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.903
	SRR3591706	second leaf	15.988
	SRR3591707	mature leaf	10.645
	SRR3591708	Shoot apex	76.291
	SRR3591709	Stem	2.192
	SRR3591710	White floral bud	5.214
	SRR3591711	White flower	19.390
	SRR3591712	Green floral bud	2.639
	SRR3591713	Yellow flower	1.210
SRP173429	SRR8316895	Juvenile bud stage	3.773
	SRR8316896	Juvenile bud stage	3.206
	SRR8316897	Juvenile bud stage	0.791
	SRR8316894	Third green stage	1.781
	SRR8316900	Third green stage	2.131
	SRR8316901	Third green stage	1.729
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.605
	SRR8316903	Complete white stage	2.035
	SRR8316902	Silver flowering stage	0.084
	SRR8316904	Silver flowering stage	0.106
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.787
	SRR6706287	Light intensity 50%	2.795
	SRR6706288	Light intensity 20%	2.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.022
	CNS0095593	Slightly white alabastrum(diploid) 2	5.258
	CNS0095594	Slightly white alabastrum(diploid) 3	3.244
	CNS0095595	Whole white alabastrum(diploid) 2	3.997
	CNS0095596	Whole white alabastrum(diploid) 3	0.512
	CNS0095597	Whole white alabastrum(diploid) 4	3.154
	CNS0095598	Silvery flower (diploied) 1	37.260
	CNS0095599	Silvery flower (diploied) 2	19.418
	CNS0095600	Silvery flower (diploied) 3	4.247
	CNS0095601	Golden flower (diploid) 1	21.988
	CNS0095602	Golden flower (diploid) 2	17.097
	CNS0095603	Golden flower (diploid) 3	17.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.467
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.304
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.313
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.388
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.865
	CNS0095610	Silvery flower (tetraploid) 1	1.311
	CNS0095611	Silvery flower (tetraploid) 2	5.691
	CNS0095612	Silvery flower (tetraploid) 3	2.414
	CNS0095613	Golden flower (tetraploid) 1	0.340
	CNS0095614	Golden flower (tetraploid) 2	1.764
	CNS0095615	Golden flower (tetraploid) 3	0.396
CRA001975	CRR073297	Stem 1	9.040
	CRR073298	Stem 2	7.027
	CRR073299	Stem 3	8.344
	CRR073300	Leaf 1	2.538
	CRR073301	Leaf 2	3.092
	CRR073302	Leaf 3	2.899
	CRR073303	Juvenile bud 1	1.269
	CRR073304	Juvenile bud 2	0.420
	CRR073305	Juvenile bud 3	0.896
	CRR073306	Third green 1	0.130
	CRR073307	Third green 2	0.016
	CRR073308	Third green 3	0.407
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.038
	CRR073311	Second white 3	0.095
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	8.433
	CRR073316	Gold flowering 2	8.849
	CRR073317	Gold flowering 3	6.950
	CRR073318	Tawny withering 1	1.121
	CRR073319	Tawny withering 2	0.734
	CRR073320	Tawny withering 3	0.747