Detail information of GWHGAAZE016383


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP20283.11.6273E-176unnamed protein product [Coffea canephora]
Swissprottr|Q058P4|PUB30_ARATH5E-135U-box domain-containing protein 30
trEMBLtr|A0A068VKT3|A0A068VKT3_COFCA6E-177Coffea canephora DH200=94 genomic scaffold, scaffold_1073 {ECO:0000313|EMBL:CDP20283.1}
TAIR10AT3G49810.13E-95ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7538499675385940-
GWHAAZE00000004mRNA7538499675385940-
GWHAAZE00000004exon7538499675385940-
GWHAAZE00000004CDS7538499675385940-
Transcript Sequence

Network for GWHGAAZE016383

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.351
SRR3591706second leaf8.971
SRR3591707mature leaf3.182
SRR3591708Shoot apex22.459
SRR3591709Stem14.709
SRR3591710White floral bud13.449
SRR3591711White flower25.058
SRR3591712Green floral bud13.481
SRR3591713Yellow flower22.639
SRP173429 SRR8316895Juvenile bud stage 7.411
SRR8316896Juvenile bud stage 10.209
SRR8316897Juvenile bud stage 6.370
SRR8316894Third green stage 6.169
SRR8316900Third green stage 10.302
SRR8316901Third green stage 10.637
SRR8316898Complete white stage 2.682
SRR8316899Complete white stage 22.780
SRR8316903Complete white stage 3.847
SRR8316902Silver flowering stage3.931
SRR8316904Silver flowering stage5.697
SRR8316905Silver flowering stage2.310
SRR8316906Gold flowering stage 13.137
SRR8316907Gold flowering stage 12.341
SRR8316908Gold flowering stage 19.883
SRP132670SRR6706286Control8.971
SRR6706287Light intensity 50%10.515
SRR6706288Light intensity 20%10.320
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.349
CNS0095593Slightly white alabastrum(diploid) 215.259
CNS0095594Slightly white alabastrum(diploid) 311.191
CNS0095595Whole white alabastrum(diploid) 211.783
CNS0095596Whole white alabastrum(diploid) 36.049
CNS0095597Whole white alabastrum(diploid) 411.007
CNS0095598Silvery flower (diploied) 116.825
CNS0095599Silvery flower (diploied) 213.370
CNS0095600Silvery flower (diploied) 313.802
CNS0095601Golden flower (diploid) 113.470
CNS0095602Golden flower (diploid) 217.334
CNS0095603Golden flower (diploid) 314.031
CNS0095604Slightly white alabastrum(tetraploid) 113.504
CNS0095605Slightly white alabastrum(tetraploid) 29.646
CNS0095606Slightly white alabastrum(tetraploid) 320.937
CNS0095607Whole white alabastrum(tetraploid) 16.106
CNS0095608Whole white alabastrum(tetraploid) 23.618
CNS0095609Whole white alabastrum(tetraploid) 37.997
CNS0095610Silvery flower (tetraploid) 110.025
CNS0095611Silvery flower (tetraploid) 27.475
CNS0095612Silvery flower (tetraploid) 317.828
CNS0095613Golden flower (tetraploid) 18.818
CNS0095614Golden flower (tetraploid) 210.884
CNS0095615Golden flower (tetraploid) 37.187
CRA001975CRR073297Stem 125.114
CRR073298Stem 225.538
CRR073299Stem 328.525
CRR073300Leaf 120.170
CRR073301Leaf 226.526
CRR073302Leaf 325.919
CRR073303Juvenile bud 128.878
CRR073304Juvenile bud 220.849
CRR073305Juvenile bud 331.547
CRR073306Third green 113.490
CRR073307Third green 212.454
CRR073308Third green 316.653
CRR073309Second white 115.536
CRR073310Second white 218.381
CRR073311Second white 318.322
CRR073312Silver flowering 149.167
CRR073313Silver flowering 236.965
CRR073314Silver flowering 321.411
CRR073315Gold flowering 115.492
CRR073316Gold flowering 215.083
CRR073317Gold flowering 319.423
CRR073318Tawny withering 122.566
CRR073319Tawny withering 212.045
CRR073320Tawny withering 321.147