Gene detail

Detail information of GWHGAAZE016389

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI19380.3	1.4229E-105	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q8H780\|SCP13_ARATH	1E-86	Serine carboxypeptidase-like 13 (Precursor)
trEMBL	tr\|F6H185\|F6H185_VITVI	7E-106	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45736.1}
TAIR10	AT2G22980.4	4E-72	serine carboxypeptidase-like 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	75517807	75527441	+
GWHAAZE00000004	mRNA	75517807	75527441	+
GWHAAZE00000004	exon	75517807	75517943	+
GWHAAZE00000004	exon	75518024	75518169	+
GWHAAZE00000004	exon	75522561	75522637	+
GWHAAZE00000004	exon	75522997	75523119	+
GWHAAZE00000004	exon	75523599	75523739	+
GWHAAZE00000004	exon	75527301	75527441	+
GWHAAZE00000004	CDS	75517807	75517943	+
GWHAAZE00000004	CDS	75518024	75518169	+
GWHAAZE00000004	CDS	75522561	75522637	+
GWHAAZE00000004	CDS	75522997	75523119	+
GWHAAZE00000004	CDS	75523599	75523739	+
GWHAAZE00000004	CDS	75527301	75527441	+

Transcript Sequence
>GWHTAAZE016409 ATGAACAAATTATTTTATTTCAATCTGTTTTTGGTTCTTGTTTTACATAATACTTGTTCACAGCTTGTACTCTCTCAGTCGGTAGTTAAGTTTCTTCCGGGATTTGAAGGTCCCCTTCCTTTTCATTTCGAAACCGGGTATGTAGGAGTGGGTGAATCTGAGGAAGTTCAGTTATTTTATTATTTTGTGAAGTCGGAAGGAAATCCTAAAGAAGATCCGGTAATTCTCTGGCTAACTGGCGGCCCTGGTTGCTCTTCCTTCTCCGGTCTTATCTATGAAATCGGTCCATTATATTTTAAGCAAGTGAAGTACAACGGAAGCTTACCCAATTTGGTATTGAACCCAAACTCATGGACAAAGATGGCGAATATATTATTTTTAGACGCACCAGTTGGTACTGGTTTCTCTTATGCAACGACGTCACGTGCTTCTCAATCTACCGATCTTCAAATGTGTGATCAAGCCTACCAATTTTTACAAAAGTGGTTGATTAATCATCCTGAATTCATTTCAAATTCCGTATATATCGGTGGAGACTCGTACTCGGGAATCCCTGTTCCTATTATTACCCAATTGATCTCAAATGGTAAGGGGGGGAAAATGTGTTACTTGCTTCAACTAAATGGTTACATACTTGGCAATCCTGTCACATATCGTGATGAAGAAGAAATTTATGTTTACCCATTTGCTCATGGGATGGGAATTATTTCAGATGAACTTTATCATGTGAGTTTTTATTTATTAGCAGAACTCCTTTTGGATTGA

Network for GWHGAAZE016389

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0105

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00450.23	Peptidase_S10	33	242	1.90E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004185	molecular_function	serine-type carboxypeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.036
	SRR3591706	second leaf	4.220
	SRR3591707	mature leaf	0.662
	SRR3591708	Shoot apex	3.966
	SRR3591709	Stem	2.814
	SRR3591710	White floral bud	2.597
	SRR3591711	White flower	1.031
	SRR3591712	Green floral bud	3.215
	SRR3591713	Yellow flower	0.341
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.069
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.289
	SRR8316900	Third green stage	0.190
	SRR8316901	Third green stage	0.090
	SRR8316898	Complete white stage	0.224
	SRR8316899	Complete white stage	0.388
	SRR8316903	Complete white stage	0.547
	SRR8316902	Silver flowering stage	0.064
	SRR8316904	Silver flowering stage	0.216
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.800
	SRR8316907	Gold flowering stage	0.129
	SRR8316908	Gold flowering stage	6.419
SRP132670	SRR6706286	Control	0.017
	SRR6706287	Light intensity 50%	0.029
	SRR6706288	Light intensity 20%	0.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.028
	CNS0095600	Silvery flower (diploied) 3	0.072
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.049
	CNS0095603	Golden flower (diploid) 3	0.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.008
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.050
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.010
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.047
	CRR073305	Juvenile bud 3	0.167
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.010
	CRR073308	Third green 3	0.147
	CRR073309	Second white 1	0.093
	CRR073310	Second white 2	0.147
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.070
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.017
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.051
	CRR073320	Tawny withering 3	0.082