Gene detail

Detail information of GWHGAAZE016394

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002285395.1	PREDICTED: U3 small nucleolar RNA-associated protein 4 [Vitis vinifera]
trEMBL	tr\|B9GNN7\|B9GNN7_POPTR	Transducin-related family protein {ECO:0000313\|EMBL:EEE80417.1}
TAIR10	AT4G07410.1	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	75686650	75695752	+
GWHAAZE00000004	mRNA	75686650	75695752	+
GWHAAZE00000004	exon	75686650	75686811	+
GWHAAZE00000004	exon	75686924	75687067	+
GWHAAZE00000004	exon	75687981	75688284	+
GWHAAZE00000004	exon	75688379	75688442	+
GWHAAZE00000004	exon	75688818	75688931	+
GWHAAZE00000004	exon	75689261	75689423	+
GWHAAZE00000004	exon	75691734	75691887	+
GWHAAZE00000004	exon	75692454	75693055	+
GWHAAZE00000004	exon	75693462	75693643	+
GWHAAZE00000004	exon	75694382	75694642	+
GWHAAZE00000004	exon	75695431	75695752	+
GWHAAZE00000004	CDS	75686650	75686811	+
GWHAAZE00000004	CDS	75686924	75687067	+
GWHAAZE00000004	CDS	75687981	75688284	+
GWHAAZE00000004	CDS	75688379	75688442	+
GWHAAZE00000004	CDS	75688818	75688931	+
GWHAAZE00000004	CDS	75689261	75689423	+
GWHAAZE00000004	CDS	75691734	75691887	+
GWHAAZE00000004	CDS	75692454	75693055	+
GWHAAZE00000004	CDS	75693462	75693643	+
GWHAAZE00000004	CDS	75694382	75694642	+
GWHAAZE00000004	CDS	75695431	75695752	+

Transcript Sequence
>GWHTAAZE016414 ATGCTCGAAGTTTACCGGAGCAGCTCAGTCGAGTGGAAGCCGTCGCCGGTGGTGGCTCTAGCCACCAGCGCCGACGACTCTCAGGTCGCCGCCGCTCGCGAAGACGGCTCCCTCGAGATTTGGCTTGTATCCCCCGGCGCCGTCGGTTGGCACCGTCAGCTCACTATACATGGAGAACAGAATTCTAGGGTTTCTTCATTGGTTTGGTGCCGGTGTAGTTCGAGTGGTGTGCCGTCAAGTCGGTTGTTTTCTTCGAGCGTTGATGGATCGGTTTCTGAATGGGACATATTTCTTTTGAAACAGAAGATTGTGCTAGATTCAGTTGGTGCCTCGATTTGGAAAATGGCTGCATCACCTAGCATTATTTCACAGCTTCAGAAAAAGCTGGATTCTGGGTTTGTTGAGAATGGTCACATTGACCCTAGATTTCATGGTGATGAAGACGAAACTAGTGAGAGTGAAGACAACGCTGAATCAATCGAGTTACGCGAGGAACCAATTACTGAAGATTCTCTTGTAGCACTTGCTTGCGATGATGGTTGTGTTCGAATATACAGTTTCTCTGACTCCGATCAGTTAACTTACAATAAATCGTTGCCAAGGGTCAGTGGCCGCATTTTGAGTGTGGCTTGGAGTCCAGATGGAAATATGATATATTCTGGGAGTAGTGATGGGTTCATTAGATGCTGGGATGTTAAGCGGTCTCATGAGGTCTACAGGATAACAGTTGGGCTTGGAGGTTTGGGTACTGGACCTGAATTTTGCATATGGTCATTAATTGCACTGAGGTGTGGTACCCTTGTTAGTGCAGATAGTACTGGTAGTGTGCAATTTTGGGACAGTGAACATGGAACCCTTTTACAAGCATATTCCTTTCATAAGGGTGACGTCAATGCTCTGGCAGCTGCTCCCGGTCATAGCAGGGTGTTCTCTGCTGGTTCGGACGGTCAGGTTATACTGTATAAGCTCTCTGGTGACGCTATGGAAGCGAATGATGACATGTCTTCGTCAAAAGTTATGAAGAAATGGGTTTATGTTGGTTATGTGAGAGCGCATACACATGATGTGAGGGCCTTGACTGTCGCAGTACCCATCAGTCAAGAAGATATTTTACTTGACGAAAAGGTAAAAAGAGTTCGTGGAAAGGAAAAACCCCTGGATTTTAGTTACCATAAATGGGCTCATTTGGGCGTCCCCATGCTGATCTCGGCCGGAGACGACACTAAGCTTTTTGCGTACTCAGCCAAGGAGTTCACCAAGTTCTCCCCACATGATATTTCCCCTGCACCACAGAGACCACCTATACAATTAGTGCTCAATACGGTTTTCGACCAGACCCCTTTACTTCTGATCCAGTCCTCTTATTGGTTAGATATTTTCTGTGTTTGTGTAAAAAGGGGTGGAGTTCCGGATACGGGTTGTGGACCTTCTGGTGGACTTGCGACAACAGATATGGTGGCCCGTGTTAAGAGTAAGGCTTCTCGAAAGATCATTTGCAGTACCATGTCTTCTTCGGGGGCGCTTTTTGCTTATTCTGACCATGTGAAACCTAGTTTGTTTGAATTGAAAAAACGTGAAAAAGCTGGGAAAAGTGCCTGGATTATTAATAAGAAGCAACTTCCTCTGAATTTATCATTTGCCCATTCCATGGTTTTCAGTTTTGATTCTTCTCGGTTGTTGTTAGCTGGACATGACAGAAAGATATATATTGTGGATGTGGGAAGTTTGGAACTAATCCATGCCTTCACCCCACGTCGCAAGGAGCTCGAGGATGCTTTGCCACCCACTGAGCCTCCAATTACAAGGATGTTTACTAGTTGTGATGGGCAGTGGCTATCTGCTATTAACTGCTTTGGAGATGTATATATATTTAACCTAGAGATACAAAGGCAGCACTGGTTCATATCGAGAATGGATGGTGCCTCAGTTACAGCTGCTGGCTTCAATCCTCGAAACAGCAACATACTTATAATCTCCACATCTTCAAACCATGTGTACGCATTTGATGTGGAGGCCAAACAGTTGGGAGAATGGTCTATGAGACACACATTTGTATTGCCCCAGAGATACCAAGAATTTCCTGGTGAAGTTGTTGGCCTTTCATTTCCACCCTCCTCTCATTCCTCAACCGTTATCGTTTACAGTGCCAGGGCGATGTGCTTGATTGACTTTGGGATGCCAATTGATCGTAATGACAACCACGACCGCGACTTAACCAATGGCCAGGATTCAGCATTGAAAAAACTACAGAATTCGGCTGTAAACGGACGGTTGAAACGTAAGTTCAAAGGACACGAATTAGAAACTAAACAAATCGGTAGAAAGAACTTCGAATTCTGTGCATTTAGAGACCCTGTTTTATTTGTTGGGCACATTTTGAAAAATTCGGTGTTGATCATAGACAAACCATGGATGCAAGTTGTTAAAACATTCGACACCGAGCCCGTTCATAGACATATTTACGGTACGTAA

Network for GWHGAAZE016394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	206	231	4.70E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14548	UTP4, CIRH1A	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.641
	SRR3591706	second leaf	9.073
	SRR3591707	mature leaf	10.326
	SRR3591708	Shoot apex	33.837
	SRR3591709	Stem	19.310
	SRR3591710	White floral bud	13.500
	SRR3591711	White flower	19.470
	SRR3591712	Green floral bud	24.673
	SRR3591713	Yellow flower	12.291
SRP173429	SRR8316895	Juvenile bud stage	13.753
	SRR8316896	Juvenile bud stage	17.661
	SRR8316897	Juvenile bud stage	9.606
	SRR8316894	Third green stage	8.479
	SRR8316900	Third green stage	24.975
	SRR8316901	Third green stage	23.879
	SRR8316898	Complete white stage	4.802
	SRR8316899	Complete white stage	34.554
	SRR8316903	Complete white stage	7.702
	SRR8316902	Silver flowering stage	5.551
	SRR8316904	Silver flowering stage	8.132
	SRR8316905	Silver flowering stage	3.608
	SRR8316906	Gold flowering stage	12.394
	SRR8316907	Gold flowering stage	11.588
	SRR8316908	Gold flowering stage	14.146
SRP132670	SRR6706286	Control	23.803
	SRR6706287	Light intensity 50%	23.706
	SRR6706288	Light intensity 20%	27.828
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.706
	CNS0095593	Slightly white alabastrum(diploid) 2	18.860
	CNS0095594	Slightly white alabastrum(diploid) 3	14.155
	CNS0095595	Whole white alabastrum(diploid) 2	17.104
	CNS0095596	Whole white alabastrum(diploid) 3	12.684
	CNS0095597	Whole white alabastrum(diploid) 4	13.264
	CNS0095598	Silvery flower (diploied) 1	19.390
	CNS0095599	Silvery flower (diploied) 2	12.544
	CNS0095600	Silvery flower (diploied) 3	17.476
	CNS0095601	Golden flower (diploid) 1	17.341
	CNS0095602	Golden flower (diploid) 2	21.998
	CNS0095603	Golden flower (diploid) 3	20.877
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.793
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.136
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.203
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.850
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.714
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.951
	CNS0095610	Silvery flower (tetraploid) 1	13.924
	CNS0095611	Silvery flower (tetraploid) 2	16.161
	CNS0095612	Silvery flower (tetraploid) 3	7.838
	CNS0095613	Golden flower (tetraploid) 1	6.573
	CNS0095614	Golden flower (tetraploid) 2	10.822
	CNS0095615	Golden flower (tetraploid) 3	10.291
CRA001975	CRR073297	Stem 1	29.382
	CRR073298	Stem 2	31.527
	CRR073299	Stem 3	30.151
	CRR073300	Leaf 1	40.214
	CRR073301	Leaf 2	32.967
	CRR073302	Leaf 3	31.933
	CRR073303	Juvenile bud 1	34.182
	CRR073304	Juvenile bud 2	20.806
	CRR073305	Juvenile bud 3	37.968
	CRR073306	Third green 1	2.309
	CRR073307	Third green 2	1.974
	CRR073308	Third green 3	4.034
	CRR073309	Second white 1	5.128
	CRR073310	Second white 2	5.946
	CRR073311	Second white 3	5.280
	CRR073312	Silver flowering 1	4.291
	CRR073313	Silver flowering 2	6.079
	CRR073314	Silver flowering 3	3.711
	CRR073315	Gold flowering 1	17.209
	CRR073316	Gold flowering 2	24.346
	CRR073317	Gold flowering 3	22.399
	CRR073318	Tawny withering 1	28.752
	CRR073319	Tawny withering 2	21.462
	CRR073320	Tawny withering 3	28.206