Detail information of GWHGAAZE016396


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285355.15.24216E-86PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera]
Swissprottr|Q94JX5|WLIM1_ARATH3E-78LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBLtr|A5BYE7|A5BYE7_VITVI2E-86Putative uncharacterized protein {ECO:0000313|EMBL:CAN72849.1}
TAIR10AT1G10200.12E-62GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7576020675762342-
GWHAAZE00000004mRNA7576020675762342-
GWHAAZE00000004exon7576020675760424-
GWHAAZE00000004exon7576142075761500-
GWHAAZE00000004exon7576177775761820-
GWHAAZE00000004exon7576205375762149-
GWHAAZE00000004exon7576231975762342-
GWHAAZE00000004CDS7576231975762342-
GWHAAZE00000004CDS7576205375762149-
GWHAAZE00000004CDS7576177775761820-
GWHAAZE00000004CDS7576142075761500-
GWHAAZE00000004CDS7576020675760424-
Transcript Sequence

Network for GWHGAAZE016396

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM701243.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf490.265
SRR3591706second leaf455.604
SRR3591707mature leaf488.461
SRR3591708Shoot apex340.342
SRR3591709Stem372.003
SRR3591710White floral bud152.826
SRR3591711White flower212.448
SRR3591712Green floral bud258.321
SRR3591713Yellow flower183.909
SRP173429 SRR8316895Juvenile bud stage 157.189
SRR8316896Juvenile bud stage 178.006
SRR8316897Juvenile bud stage 82.898
SRR8316894Third green stage 80.652
SRR8316900Third green stage 232.768
SRR8316901Third green stage 206.801
SRR8316898Complete white stage 85.667
SRR8316899Complete white stage 328.290
SRR8316903Complete white stage 107.234
SRR8316902Silver flowering stage100.189
SRR8316904Silver flowering stage106.909
SRR8316905Silver flowering stage56.992
SRR8316906Gold flowering stage 201.549
SRR8316907Gold flowering stage 215.085
SRR8316908Gold flowering stage 269.189
SRP132670SRR6706286Control234.169
SRR6706287Light intensity 50%270.552
SRR6706288Light intensity 20%321.790
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1162.429
CNS0095593Slightly white alabastrum(diploid) 2202.947
CNS0095594Slightly white alabastrum(diploid) 3131.081
CNS0095595Whole white alabastrum(diploid) 2137.658
CNS0095596Whole white alabastrum(diploid) 3142.316
CNS0095597Whole white alabastrum(diploid) 4127.232
CNS0095598Silvery flower (diploied) 1168.606
CNS0095599Silvery flower (diploied) 2157.554
CNS0095600Silvery flower (diploied) 3187.850
CNS0095601Golden flower (diploid) 1127.728
CNS0095602Golden flower (diploid) 2190.864
CNS0095603Golden flower (diploid) 3195.137
CNS0095604Slightly white alabastrum(tetraploid) 197.114
CNS0095605Slightly white alabastrum(tetraploid) 284.725
CNS0095606Slightly white alabastrum(tetraploid) 3136.509
CNS0095607Whole white alabastrum(tetraploid) 159.471
CNS0095608Whole white alabastrum(tetraploid) 256.770
CNS0095609Whole white alabastrum(tetraploid) 377.235
CNS0095610Silvery flower (tetraploid) 1128.322
CNS0095611Silvery flower (tetraploid) 2145.490
CNS0095612Silvery flower (tetraploid) 3145.109
CNS0095613Golden flower (tetraploid) 1119.170
CNS0095614Golden flower (tetraploid) 287.036
CNS0095615Golden flower (tetraploid) 344.089
CRA001975CRR073297Stem 1310.322
CRR073298Stem 2264.265
CRR073299Stem 3423.138
CRR073300Leaf 1270.463
CRR073301Leaf 2304.309
CRR073302Leaf 3419.440
CRR073303Juvenile bud 1386.164
CRR073304Juvenile bud 2273.468
CRR073305Juvenile bud 3397.375
CRR073306Third green 1238.942
CRR073307Third green 2228.922
CRR073308Third green 3211.914
CRR073309Second white 1208.758
CRR073310Second white 2128.223
CRR073311Second white 3115.340
CRR073312Silver flowering 1107.260
CRR073313Silver flowering 2127.598
CRR073314Silver flowering 386.249
CRR073315Gold flowering 1444.345
CRR073316Gold flowering 2384.731
CRR073317Gold flowering 3513.322
CRR073318Tawny withering 1617.357
CRR073319Tawny withering 2392.488
CRR073320Tawny withering 3834.495