Gene detail

Detail information of GWHGAAZE016416

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006363933.1	1.491E-156	PREDICTED: transcription initiation factor TFIID subunit 4b-like [Solanum tuberosum]
Swissprot	tr\|F4K4L7\|TAF4B_ARATH	2E-104	Transcription initiation factor TFIID subunit 4b
trEMBL	tr\|F6GZN3\|F6GZN3_VITVI	1E-154	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45765.1}
TAIR10	AT5G43130.1	1E-79	TBP-associated factor 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	76041042	76043965	+
GWHAAZE00000004	mRNA	76041042	76043965	+
GWHAAZE00000004	exon	76041042	76041172	+
GWHAAZE00000004	exon	76041486	76041573	+
GWHAAZE00000004	exon	76041691	76041826	+
GWHAAZE00000004	exon	76041953	76042008	+
GWHAAZE00000004	exon	76042170	76042226	+
GWHAAZE00000004	exon	76042308	76042454	+
GWHAAZE00000004	exon	76042535	76042600	+
GWHAAZE00000004	exon	76042907	76043174	+
GWHAAZE00000004	exon	76043778	76043965	+
GWHAAZE00000004	CDS	76041042	76041172	+
GWHAAZE00000004	CDS	76041486	76041573	+
GWHAAZE00000004	CDS	76041691	76041826	+
GWHAAZE00000004	CDS	76041953	76042008	+
GWHAAZE00000004	CDS	76042170	76042226	+
GWHAAZE00000004	CDS	76042308	76042454	+
GWHAAZE00000004	CDS	76042535	76042600	+
GWHAAZE00000004	CDS	76042907	76043174	+
GWHAAZE00000004	CDS	76043778	76043947	+
GWHAAZE00000004	three_prime_UTR	76043948	76043965	+

Transcript Sequence
>GWHTAAZE016436 TTAAGCTCTCGGATCCCATCTGCAACCTCTCCAGTTGGACCTGGAAGTAATGCAAAGACAACCCACCAAAAGCCTACTCTTGGCCAGAAAAAACCACTTGAAGCACTATGTTCTTCCCCACCTCTTTCAGGTAAGAAGCAAAAAGTATCCGGATCCTTTTCCAATCAAAGCATTGAACAACTCAATGATGTGGCAGCTGTCAGTGGAGTTAATCTTAGGGAAGAGGAAGAACAACTGTTTACCGGGCCCAAGGAAGACAATCGAGTTTCAGAAGCATTGCGAAGGGTTGTACAAGAAGAAGAAGAAAGGCTCATTCTGCAGAGAACTCCACTTCGGAAAAAGTTGGCAGAAATCTTGACAAAATGTGGAGTAAAGGGTATAAGCAATGATGTGGAGCGATGCTTGTCATTGTGCATGGAGGAACGAATGCGTGGACTTATAAGTAATCTTGTCAAACTATCAAAACAGCGTGCTGATCTAGAGAAGCAGAGACACCGCTCTGTTATCACCTCAGATGTTGCCCAACAAATAATAATGATGAATAAGAAAGCTAGGGAAAAGTCGGCGAAAGCAAAGGAACAGGCTGATCTAGAAACACTCCAAAAGATGAATGAAAATGAAAGTAATACTGGAGTTGATGGTGATAAGGAGAAAGATAATGGCTGTGGAAAATCTATCAAGGGAAGCAAAGACGATGATGAAAATAAGTGGACAACAGCTGCAAATGTTGCTGCCCGGGCTGCTGTTGGAGGAGACGATATGTTGTCAAAATGGCAACTAATTGCCGAACAGGCACGCCAGAAACGTGGAGGAGTAACTGATGCTGCTTCTTCTGATTCTTCTCAGCCAGGCAAAGATGTGAGCTGCAACTCTGTAGCAACAAGGAATGCCAGGGATAATAATCAAGAAGCAGAAAGGAGAAAACATGCACCTTCTGGTCCCACATCTGGAACATTAAGAAAAATTGGGAGGAATAAAGATGTGGTGCCTCAGTCCGTTCTGAGGCGTAAAATTTCCGTTAAAGATGTAATTGCGGTACTGGAGAGGGAGCAACAGACGTCGAAGTCCACATTATTATATCGCTTGTATGAAAAATTGTGTAATACTGTAATTGAATAGTAAAATTTTTGGGTGAAT

Network for GWHGAAZE016416

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05236.15	TAF4	61	362	5.00E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03129	TAF4	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006352	biological_process	DNA-templated transcription, initiation
GO:0005669	cellular_component	transcription factor TFIID complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.784
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.380
	SRR3591708	Shoot apex	0.390
	SRR3591709	Stem	1.627
	SRR3591710	White floral bud	0.231
	SRR3591711	White flower	0.066
	SRR3591712	Green floral bud	0.401
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.156
	SRR8316896	Juvenile bud stage	2.234
	SRR8316897	Juvenile bud stage	0.113
	SRR8316894	Third green stage	0.502
	SRR8316900	Third green stage	0.631
	SRR8316901	Third green stage	0.493
	SRR8316898	Complete white stage	0.038
	SRR8316899	Complete white stage	0.411
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.224
	SRR8316905	Silver flowering stage	0.113
	SRR8316906	Gold flowering stage	0.241
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.085
SRP132670	SRR6706286	Control	0.477
	SRR6706287	Light intensity 50%	0.620
	SRR6706288	Light intensity 20%	0.305
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.803
	CNS0095593	Slightly white alabastrum(diploid) 2	1.286
	CNS0095594	Slightly white alabastrum(diploid) 3	1.452
	CNS0095595	Whole white alabastrum(diploid) 2	0.152
	CNS0095596	Whole white alabastrum(diploid) 3	0.430
	CNS0095597	Whole white alabastrum(diploid) 4	0.218
	CNS0095598	Silvery flower (diploied) 1	0.217
	CNS0095599	Silvery flower (diploied) 2	0.038
	CNS0095600	Silvery flower (diploied) 3	0.039
	CNS0095601	Golden flower (diploid) 1	0.045
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.594
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.662
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.494
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.380
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.129
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.457
	CNS0095610	Silvery flower (tetraploid) 1	0.043
	CNS0095611	Silvery flower (tetraploid) 2	0.089
	CNS0095612	Silvery flower (tetraploid) 3	0.114
	CNS0095613	Golden flower (tetraploid) 1	0.034
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.062
CRA001975	CRR073297	Stem 1	0.425
	CRR073298	Stem 2	1.095
	CRR073299	Stem 3	0.284
	CRR073300	Leaf 1	0.420
	CRR073301	Leaf 2	0.160
	CRR073302	Leaf 3	0.476
	CRR073303	Juvenile bud 1	0.327
	CRR073304	Juvenile bud 2	0.117
	CRR073305	Juvenile bud 3	0.061
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.080
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.150
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.426
	CRR073317	Gold flowering 3	0.007
	CRR073318	Tawny withering 1	0.092
	CRR073319	Tawny withering 2	0.208
	CRR073320	Tawny withering 3	0.000