Gene detail

Detail information of GWHGAAZE016424

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603340.1	0	PREDICTED: putative cyclin-A3-1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FMH5\|CCA31_ARATH	3E-151	Putative cyclin-A3-1
trEMBL	tr\|O04388\|O04388_CATRO	0	A-type cyclin {ECO:0000313\|EMBL:BAA20410.1}
TAIR10	AT5G43080.1	1E-114	Cyclin A3;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	76172463	76175252	-
GWHAAZE00000004	mRNA	76172463	76175252	-
GWHAAZE00000004	exon	76172463	76172534	-
GWHAAZE00000004	exon	76172879	76173013	-
GWHAAZE00000004	exon	76173109	76173292	-
GWHAAZE00000004	exon	76173415	76173567	-
GWHAAZE00000004	exon	76173699	76173931	-
GWHAAZE00000004	exon	76174926	76175252	-
GWHAAZE00000004	CDS	76174926	76175252	-
GWHAAZE00000004	CDS	76173699	76173931	-
GWHAAZE00000004	CDS	76173415	76173567	-
GWHAAZE00000004	CDS	76173109	76173292	-
GWHAAZE00000004	CDS	76172879	76173013	-
GWHAAZE00000004	CDS	76172463	76172534	-

Transcript Sequence
>GWHTAAZE016444 ATGGCGGATCAAGAGAACTGCGTGAGGCTCACGCGCATGGCCAAGAAAAGGGCGGCCGAGGCAATTGCGGCGACAGTGATGCCGAAGAAGAAGAAGAGGGTGGTGCTGGGTGAGTTATCGAATAATCTTTCGAATGTTTTTGGGCCGGATCAGGATCCTCTTCTGGGTTCATTAGAGATTGAGAAGGGGAAATCTAGATCCAAGAAGAAGAAGTTGAAGAAAGCCGTGGTTAAGAATTTTGAGAATGTAGAAGATTTGAAATCGGATGATCCCCAATTGTGTAGTGCTTATGTCTCTCAGATTTATGACTACCTTCGTCAAATTGAGATTGAAGCAAAGAGACGACCGCTGCCAGATTATATAGAGAAGATTCAAAAGGATGTGAGTGTTAACATGAGAGGGATTTTGGTGGATTGGTTAGTTGAGGTTGCCGATGAATACAAGCTTCTTTCAGACACACTCTATTTAACCATTTCTTACATCGATAGATTCTTATCAATAAATGCGCTTAGTCGGCAAAAGCTTCAGCTTCTTGGTGTCTCTTCGATGCTCATCGCCTCAAAGTACGAAGAGATCCACCCTCCACATGTGGAAGATTTTTGTTACATCACCGATAATACATACACCAAAGAAGACATAGTGAAGATGGAAGCAGAGGTGCTCAAATCCCTCAAGTTTGAGATGGGGAATCCCACAGTTAAAACATTTCTCAGAAAATTTACCAAAGTTGCTCAAGAGGGTTGCAAAGCGGACTCTTTATTGTTGGAGTTCTTGGGTTATTACCTAGCAGAATTAAGTCTTCTAGAGTACGGTTGTGTTAAATTCTTACCTTCTATGGTTGCGGCTTCTGCATTATTTGTTTCAAGATTCACAATCAAACCAAAGTCGCATCCTTGGAGTACAGCTTTGCATCATTACTCTGGTTATAAGCCAGCTGAGTTGAAGGACTGTGTTCTTGTCATACATGACTTGCAATTGAGTAGAAGAGGAAGCTCTTTAGTGGCTGTGAGGGAGAAATACAAGAACCATAAGTTCAAATGCGTGTCGGGATTGGCTTCACCTCCAGAGATACCAGATACCTTCTTTGATGATATTGAAGAATGA

Network for GWHGAAZE016424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.24	Cyclin_N	101	228	3.10E-42
PF02984.20	Cyclin_C	231	352	8.80E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06627	CCNA	AMPK signaling pathway	map04152
		Cell cycle	map04110
		Cellular senescence	map04218
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.736
	SRR3591706	second leaf	2.119
	SRR3591707	mature leaf	0.564
	SRR3591708	Shoot apex	21.341
	SRR3591709	Stem	2.185
	SRR3591710	White floral bud	1.763
	SRR3591711	White flower	0.855
	SRR3591712	Green floral bud	1.211
	SRR3591713	Yellow flower	0.757
SRP173429	SRR8316895	Juvenile bud stage	2.009
	SRR8316896	Juvenile bud stage	2.337
	SRR8316897	Juvenile bud stage	0.613
	SRR8316894	Third green stage	0.533
	SRR8316900	Third green stage	0.761
	SRR8316901	Third green stage	0.800
	SRR8316898	Complete white stage	0.503
	SRR8316899	Complete white stage	0.776
	SRR8316903	Complete white stage	0.487
	SRR8316902	Silver flowering stage	0.308
	SRR8316904	Silver flowering stage	0.420
	SRR8316905	Silver flowering stage	0.303
	SRR8316906	Gold flowering stage	0.659
	SRR8316907	Gold flowering stage	0.439
	SRR8316908	Gold flowering stage	0.122
SRP132670	SRR6706286	Control	0.705
	SRR6706287	Light intensity 50%	0.855
	SRR6706288	Light intensity 20%	0.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.112
	CNS0095593	Slightly white alabastrum(diploid) 2	0.949
	CNS0095594	Slightly white alabastrum(diploid) 3	1.164
	CNS0095595	Whole white alabastrum(diploid) 2	0.498
	CNS0095596	Whole white alabastrum(diploid) 3	0.902
	CNS0095597	Whole white alabastrum(diploid) 4	0.509
	CNS0095598	Silvery flower (diploied) 1	2.179
	CNS0095599	Silvery flower (diploied) 2	2.403
	CNS0095600	Silvery flower (diploied) 3	0.945
	CNS0095601	Golden flower (diploid) 1	1.411
	CNS0095602	Golden flower (diploid) 2	0.681
	CNS0095603	Golden flower (diploid) 3	0.719
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.179
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.764
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.055
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.133
	CNS0095610	Silvery flower (tetraploid) 1	1.270
	CNS0095611	Silvery flower (tetraploid) 2	0.241
	CNS0095612	Silvery flower (tetraploid) 3	0.396
	CNS0095613	Golden flower (tetraploid) 1	0.508
	CNS0095614	Golden flower (tetraploid) 2	0.327
	CNS0095615	Golden flower (tetraploid) 3	0.735
CRA001975	CRR073297	Stem 1	2.691
	CRR073298	Stem 2	2.310
	CRR073299	Stem 3	1.776
	CRR073300	Leaf 1	0.488
	CRR073301	Leaf 2	0.927
	CRR073302	Leaf 3	0.306
	CRR073303	Juvenile bud 1	0.093
	CRR073304	Juvenile bud 2	0.076
	CRR073305	Juvenile bud 3	0.156
	CRR073306	Third green 1	0.052
	CRR073307	Third green 2	0.209
	CRR073308	Third green 3	0.209
	CRR073309	Second white 1	0.108
	CRR073310	Second white 2	0.137
	CRR073311	Second white 3	0.456
	CRR073312	Silver flowering 1	0.074
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.104
	CRR073315	Gold flowering 1	0.124
	CRR073316	Gold flowering 2	1.258
	CRR073317	Gold flowering 3	0.204
	CRR073318	Tawny withering 1	3.382
	CRR073319	Tawny withering 2	2.941
	CRR073320	Tawny withering 3	3.446