Detail information of GWHGAAZE016431


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009598219.11.9091E-104PREDICTED: cyclin-D3-1-like [Nicotiana tomentosiformis]
Swissprottr|Q9FGQ7|CCD32_ARATH2E-74Cyclin-D3-2
trEMBLtr|Q9SNV1|Q9SNV1_ANTMA7E-100Cyclin D3a {ECO:0000313|EMBL:CAB61222.1} (Fragment)
TAIR10AT5G67260.12E-54CYCLIN D3;2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7655578076558368-
GWHAAZE00000004mRNA7655578076558368-
GWHAAZE00000004exon7655806376558368-
GWHAAZE00000004exon7655703576557236-
GWHAAZE00000004exon7655654276556672-
GWHAAZE00000004exon7655578076555986-
GWHAAZE00000004CDS7655806376558368-
GWHAAZE00000004CDS7655703576557236-
GWHAAZE00000004CDS7655654276556672-
GWHAAZE00000004CDS7655578076555986-
Transcript Sequence

Network for GWHGAAZE016431

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.24Cyclin_N281318.30E-25
PF02984.20Cyclin_C1332456.40E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14505CYCD3 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.623
SRR3591706second leaf59.314
SRR3591707mature leaf19.419
SRR3591708Shoot apex150.249
SRR3591709Stem23.081
SRR3591710White floral bud20.164
SRR3591711White flower28.936
SRR3591712Green floral bud12.080
SRR3591713Yellow flower4.005
SRP173429 SRR8316895Juvenile bud stage 16.194
SRR8316896Juvenile bud stage 11.722
SRR8316897Juvenile bud stage 8.660
SRR8316894Third green stage 5.310
SRR8316900Third green stage 7.043
SRR8316901Third green stage 7.860
SRR8316898Complete white stage 1.486
SRR8316899Complete white stage 15.809
SRR8316903Complete white stage 5.433
SRR8316902Silver flowering stage0.635
SRR8316904Silver flowering stage1.113
SRR8316905Silver flowering stage0.342
SRR8316906Gold flowering stage 1.029
SRR8316907Gold flowering stage 1.253
SRR8316908Gold flowering stage 3.123
SRP132670SRR6706286Control5.024
SRR6706287Light intensity 50%4.640
SRR6706288Light intensity 20%4.082
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.894
CNS0095593Slightly white alabastrum(diploid) 29.923
CNS0095594Slightly white alabastrum(diploid) 38.141
CNS0095595Whole white alabastrum(diploid) 27.894
CNS0095596Whole white alabastrum(diploid) 33.383
CNS0095597Whole white alabastrum(diploid) 44.572
CNS0095598Silvery flower (diploied) 130.253
CNS0095599Silvery flower (diploied) 223.140
CNS0095600Silvery flower (diploied) 310.245
CNS0095601Golden flower (diploid) 118.781
CNS0095602Golden flower (diploid) 216.551
CNS0095603Golden flower (diploid) 315.166
CNS0095604Slightly white alabastrum(tetraploid) 114.345
CNS0095605Slightly white alabastrum(tetraploid) 29.012
CNS0095606Slightly white alabastrum(tetraploid) 328.297
CNS0095607Whole white alabastrum(tetraploid) 111.346
CNS0095608Whole white alabastrum(tetraploid) 21.456
CNS0095609Whole white alabastrum(tetraploid) 36.473
CNS0095610Silvery flower (tetraploid) 111.517
CNS0095611Silvery flower (tetraploid) 214.722
CNS0095612Silvery flower (tetraploid) 36.846
CNS0095613Golden flower (tetraploid) 11.706
CNS0095614Golden flower (tetraploid) 25.212
CNS0095615Golden flower (tetraploid) 35.225
CRA001975CRR073297Stem 111.179
CRR073298Stem 29.169
CRR073299Stem 311.734
CRR073300Leaf 14.256
CRR073301Leaf 24.165
CRR073302Leaf 34.556
CRR073303Juvenile bud 11.690
CRR073304Juvenile bud 21.654
CRR073305Juvenile bud 33.365
CRR073306Third green 10.878
CRR073307Third green 20.672
CRR073308Third green 30.873
CRR073309Second white 10.675
CRR073310Second white 20.834
CRR073311Second white 30.358
CRR073312Silver flowering 10.535
CRR073313Silver flowering 20.090
CRR073314Silver flowering 31.294
CRR073315Gold flowering 16.957
CRR073316Gold flowering 213.303
CRR073317Gold flowering 313.116
CRR073318Tawny withering 134.173
CRR073319Tawny withering 221.765
CRR073320Tawny withering 339.277