Gene detail

Detail information of GWHGAAZE016455

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004252759.1	7.8891E-162	PREDICTED: 39S ribosomal protein L4, mitochondrial [Solanum lycopersicum]
Swissprot	tr\|A0T0H9\|RK4_PHATC	1E-27	50S ribosomal protein L4, chloroplastic
trEMBL	tr\|K4DGU4\|K4DGU4_SOLLC	3E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g088730.1.1}
TAIR10	AT2G20060.1	3E-118	Ribosomal protein L4/L1 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	76935213	76941018	+
GWHAAZE00000004	mRNA	76935213	76941018	+
GWHAAZE00000004	exon	76935213	76935300	+
GWHAAZE00000004	exon	76935413	76935474	+
GWHAAZE00000004	exon	76935740	76935866	+
GWHAAZE00000004	exon	76935971	76936119	+
GWHAAZE00000004	exon	76936498	76936605	+
GWHAAZE00000004	exon	76937870	76937935	+
GWHAAZE00000004	exon	76938210	76938383	+
GWHAAZE00000004	exon	76940917	76941018	+
GWHAAZE00000004	CDS	76935213	76935300	+
GWHAAZE00000004	CDS	76935413	76935474	+
GWHAAZE00000004	CDS	76935740	76935866	+
GWHAAZE00000004	CDS	76935971	76936119	+
GWHAAZE00000004	CDS	76936498	76936605	+
GWHAAZE00000004	CDS	76937870	76937935	+
GWHAAZE00000004	CDS	76938210	76938383	+
GWHAAZE00000004	CDS	76940917	76941018	+

Transcript Sequence
>GWHTAAZE016475 ATGGCCTTATCAATTTCTCGGAGGCTCTTGCATTCTGGTTCCTTCACCAAAAACCCAAGTGTGCAATCATTTCGTATTTTATCTAATGCTTTGTGCGGCCATTTATTTGGGGATAGTATATCTTCTGTTGTACAGTCTACCTTTGGGAAGGGTGAGTCATTATTAACTGTTTGTCGAAGGCTTTCAACTTCTATCCTTACTCCTGAATCAAATGAAGGTTCATTTCCTTCTGATTTATTAACCGCAAAGCGTGTTCTAACCCCAGAACGCACAATAGGACTCTATCAGGACCTGGTTATCCCTGTGACAAATTTTAATAATGAAGATAAAGGGTTGATGGTTTTGGCTGGTGATGTTTTTGATGTACCTATTAGGAAAGATATTGTTCACCGTGTTGTAAGATGGCAGCTTGCTAAACGGCAACAGGGAACCCATTCGACGAAAACTCTTAGTGAGGTCAGTGGAACTGGGAGAAAGCCGTGGCGGCAGAAGGGTACTGGTCGAGCAAGGCATGGAACATTGCGTGGGCCTCAGTTTAGGCACGGCTGTGCTATGCACGGCCCAAAACCACGAAGCCATGCTATCAAGCTGAACAAGAAGCTTCTGATTTTTGAGGATTTAGAGGTCCCTACGCATAAGACGAAGAACATTGTCAACTATGCCAAGCAAATGGAGAACACCAAGAAGATTCTGCTTGTAGATGGGGGTCCAATTACTGAAAAATTAAAGCTGGCTACTCAAAATTTGCATTATGTTAATGTGCTGCCTTCGATTGGTCTGAATGTCTACAGCATACTGCTACATGACACATTAGTAATGTCCCGTGATGCAGTGAATAAGATAGTTGAGCGCATGCACACTCCAATTAACCGTTAA

Network for GWHGAAZE016455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00573.23	Ribosomal_L4	115	283	2.80E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02926	RP-L4, MRPL4, rplD	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.348
	SRR3591706	second leaf	12.964
	SRR3591707	mature leaf	10.991
	SRR3591708	Shoot apex	36.993
	SRR3591709	Stem	19.341
	SRR3591710	White floral bud	18.583
	SRR3591711	White flower	28.085
	SRR3591712	Green floral bud	27.682
	SRR3591713	Yellow flower	23.569
SRP173429	SRR8316895	Juvenile bud stage	27.177
	SRR8316896	Juvenile bud stage	37.378
	SRR8316897	Juvenile bud stage	17.797
	SRR8316894	Third green stage	12.871
	SRR8316900	Third green stage	38.043
	SRR8316901	Third green stage	29.380
	SRR8316898	Complete white stage	10.464
	SRR8316899	Complete white stage	32.771
	SRR8316903	Complete white stage	15.041
	SRR8316902	Silver flowering stage	13.123
	SRR8316904	Silver flowering stage	13.005
	SRR8316905	Silver flowering stage	6.451
	SRR8316906	Gold flowering stage	20.002
	SRR8316907	Gold flowering stage	22.898
	SRR8316908	Gold flowering stage	33.088
SRP132670	SRR6706286	Control	18.972
	SRR6706287	Light intensity 50%	18.395
	SRR6706288	Light intensity 20%	21.356
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.099
	CNS0095593	Slightly white alabastrum(diploid) 2	31.338
	CNS0095594	Slightly white alabastrum(diploid) 3	31.333
	CNS0095595	Whole white alabastrum(diploid) 2	26.188
	CNS0095596	Whole white alabastrum(diploid) 3	26.193
	CNS0095597	Whole white alabastrum(diploid) 4	19.860
	CNS0095598	Silvery flower (diploied) 1	30.198
	CNS0095599	Silvery flower (diploied) 2	24.812
	CNS0095600	Silvery flower (diploied) 3	26.028
	CNS0095601	Golden flower (diploid) 1	18.135
	CNS0095602	Golden flower (diploid) 2	24.643
	CNS0095603	Golden flower (diploid) 3	24.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.261
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.361
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.711
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.469
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.196
	CNS0095610	Silvery flower (tetraploid) 1	26.920
	CNS0095611	Silvery flower (tetraploid) 2	26.831
	CNS0095612	Silvery flower (tetraploid) 3	25.071
	CNS0095613	Golden flower (tetraploid) 1	19.310
	CNS0095614	Golden flower (tetraploid) 2	21.206
	CNS0095615	Golden flower (tetraploid) 3	20.804
CRA001975	CRR073297	Stem 1	22.311
	CRR073298	Stem 2	19.862
	CRR073299	Stem 3	21.880
	CRR073300	Leaf 1	18.557
	CRR073301	Leaf 2	22.762
	CRR073302	Leaf 3	19.253
	CRR073303	Juvenile bud 1	22.371
	CRR073304	Juvenile bud 2	16.291
	CRR073305	Juvenile bud 3	18.613
	CRR073306	Third green 1	4.600
	CRR073307	Third green 2	4.341
	CRR073308	Third green 3	3.932
	CRR073309	Second white 1	9.887
	CRR073310	Second white 2	10.521
	CRR073311	Second white 3	7.192
	CRR073312	Silver flowering 1	7.128
	CRR073313	Silver flowering 2	8.162
	CRR073314	Silver flowering 3	5.799
	CRR073315	Gold flowering 1	10.738
	CRR073316	Gold flowering 2	12.351
	CRR073317	Gold flowering 3	10.683
	CRR073318	Tawny withering 1	17.189
	CRR073319	Tawny withering 2	19.580
	CRR073320	Tawny withering 3	23.522